SEED Subsystem: Nitrate and nitrite ammonification in Pseudomonas fluorescens FW300-N2E2

Experiments:

Role Gene Name  
Assimilatory nitrate reductase large subunit (EC:1.7.99.4) Pf6N2E2_2380
Cytochrome c nitrite reductase, small subunit NrfH No genes
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly No genes
Cytochrome c-type protein NapC Pf6N2E2_1599
Cytochrome c-type protein NrfB precursor No genes
Cytochrome c552 precursor (EC 1.7.2.2) No genes
Ferredoxin--nitrite reductase (EC 1.7.7.1) No genes
Ferredoxin-type protein NapF (periplasmic nitrate reductase) No genes
Ferredoxin-type protein NapG (periplasmic nitrate reductase) No genes
Nitrate ABC transporter, ATP-binding protein No genes
Nitrate ABC transporter, nitrate-binding protein Pf6N2E2_2374
Nitrate ABC transporter, permease protein No genes
Nitrate reductase cytochrome c550-type subunit Pf6N2E2_1598
Nitrate/nitrite response regulator protein Pf6N2E2_725
Nitrate/nitrite sensor protein (EC 2.7.3.-) Pf6N2E2_726
Nitrate/nitrite transporter Pf6N2E2_1014
  Pf6N2E2_1042
  Pf6N2E2_1105
  Pf6N2E2_1664
  Pf6N2E2_2376
  Pf6N2E2_610
  Pf6N2E2_727
  Pf6N2E2_728
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) Pf6N2E2_1114
  Pf6N2E2_2378
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) Pf6N2E2_1115
  Pf6N2E2_2379
Nitrite reductase probable [NAD(P)H] subunit (EC 1.7.1.4) No genes
Nitrite reductase probable electron transfer 4Fe-S subunit (EC 1.7.1.4) No genes
Nitrite transporter NirC No genes
Nitrite transporter from formate/nitrite family No genes
NrfC protein No genes
NrfD protein No genes
Periplasmic nitrate reductase component NapD Pf6N2E2_1596
Periplasmic nitrate reductase component NapE Pf6N2E2_1595
Periplasmic nitrate reductase component NapL No genes
Periplasmic nitrate reductase precursor (EC 1.7.99.4) Pf6N2E2_1597
Polyferredoxin NapH (periplasmic nitrate reductase) No genes
Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly No genes
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) Pf6N2E2_729
Respiratory nitrate reductase beta chain (EC 1.7.99.4) Pf6N2E2_730
Respiratory nitrate reductase delta chain (EC 1.7.99.4) Pf6N2E2_731
Respiratory nitrate reductase gamma chain (EC 1.7.99.4) Pf6N2E2_732
Respiratory nitrate reductase subunit, conjectural (EC 1.7.99.4) No genes
Response regulator NasT Pf6N2E2_2375

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