SEED Subsystem: Coenzyme B12 biosynthesis in Pseudomonas fluorescens FW300-N2E2

Experiments:

Role Gene Name  
5,6-dimethylbenzimidazole synthase, flavin destructase family No genes
ATPase component CbiO of energizing module of cobalt ECF transporter No genes
Additional lipoprotein component of predicted cobalamin ECF transporter No genes
Additional substrate-specific component CbiN of cobalt ECF transporter No genes
Adenosylcobinamide amidohydrolase (EC 3.5.1.90) No genes
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) Pf6N2E2_5743
Adenosylcobinamide-phosphate synthase No genes
Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2) No genes
Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) No genes
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) Pf6N2E2_5745
CblX, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase No genes
CblY, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase No genes
CblZ, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase No genes
ChlD component of cobalt chelatase involved in B12 biosynthesis Pf6N2E2_2058
ChlI component of cobalt chelatase involved in B12 biosynthesis Pf6N2E2_2059
Cob(I)alamin adenosyltransferase (EC 2.5.1.17) Pf6N2E2_5737
Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17) No genes
Cob(II)alamin reductase No genes
CobN component of cobalt chelatase involved in B12 biosynthesis Pf6N2E2_2060
  Pf6N2E2_5601
CobW GTPase involved in cobalt insertion for B12 biosynthesis Pf6N2E2_2061
Cobalamin biosynthesis protein CbiG Pf6N2E2_3531
Cobalamin biosynthesis protein CobG Pf6N2E2_3534
Cobalamin synthase Pf6N2E2_5746
Cobalamine-related hypothetical metal-binding protein CrdX No genes
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) Pf6N2E2_3532
Cobalt-precorrin-3b C17-methyltransferase Pf6N2E2_2064
  Pf6N2E2_3531
Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) Pf6N2E2_2065
Cobalt-precorrin-6 synthase, anaerobic Pf6N2E2_3536
Cobalt-precorrin-6x reductase (EC 1.3.1.54) Pf6N2E2_3537
Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) Pf6N2E2_3535
Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) Pf6N2E2_3535
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) Pf6N2E2_3533
Cobyric acid synthase No genes
Cobyrinic acid A,C-diamide synthase Pf6N2E2_5738
Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter No genes
HoxN/HupN/NixA family cobalt transporter No genes
HupE-UreJ family cobalt transporter No genes
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) Pf6N2E2_5741
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) Pf6N2E2_5744
Optional hypothetical component of the B12 transporter BtuM No genes
Optional hypothetical component of the B12 transporter BtuN No genes
Outer membrane vitamin B12 receptor BtuB Pf6N2E2_4930
Precorrin-6A synthase (EC 2.1.1.152) Pf6N2E2_2173
Predicted adenosylcobinamide-phosphate guanylyltransferase CobY (EC 2.7.7.62) No genes
Predicted alpha-ribazole-5'-phosphate phosphatase CobZ (EC 3.1.3.73) No genes
Predicted alpha-ribazole-5-phosphate synthase CblS for cobalamin biosynthesis No genes
Predicted cobalt ABC transporter periplasmic component No genes
Predicted cobalt transporter CbtA Pf6N2E2_2063
Predicted cobalt transporter CbtC Pf6N2E2_874
Predicted cobalt transporter in Bacteroides_Porphyromonas No genes
Predicted cobalt transporter in Mycobacteria No genes
Predicted cobalt transporter in Thermoplasma No genes
Predicted cobalt transporter in sulfate-reducing delta-proteobacteria No genes
Putative 2Fe-2S ferredoxin CbiW involved in B12 biosynthesis No genes
Sirohydrochlorin cobaltochelatase (EC 4.99.1.3) No genes
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) No genes
Substrate-specific component CbiM of cobalt ECF transporter No genes
Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole No genes
Substrate-specific component CbrT of predicted cobalamin ECF transporter No genes
Threonine kinase in B12 biosynthesis No genes
Transmembrane component CbiQ of energizing module of cobalt ECF transporter No genes
Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter No genes
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Pf6N2E2_2381
  Pf6N2E2_302
  Pf6N2E2_696
Vitamin B12 ABC transporter, ATPase component BtuD No genes
Vitamin B12 ABC transporter, B12-binding component BtuF Pf6N2E2_1685
  Pf6N2E2_4929
Vitamin B12 ABC transporter, permease component BtuC No genes

Or select organism:

Or view this subsystem at the SEED (slow)