SEED Subsystem: Polyamine Metabolism in Pseudomonas fluorescens FW300-N2C3

Experiments:

Role Gene Name  
4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19) AO356_06290
  AO356_06315
5'-methylthioadenosine nucleosidase (EC 3.2.2.16) No genes
ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) AO356_06295
  AO356_14390
  AO356_25405
Agmatinase (EC 3.5.3.11) AO356_04095
Agmatine deiminase (EC 3.5.3.12) AO356_10030
Agmatine/putrescine antiporter, associated with agmatine catabolism No genes
Arginine decarboxylase (EC 4.1.1.19) AO356_07310
Arginine decarboxylase, catabolic (EC 4.1.1.19) No genes
Arginine/agmatine antiporter No genes
Arginine/ornithine antiporter No genes
Arginine/ornithine antiporter ArcD AO356_05260
  AO356_05265
  AO356_23935
Biosynthetic arginine decarboxylase (EC 4.1.1.19) AO356_08155
Carbamate kinase (EC 2.7.2.2) AO356_05280
Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) AO356_23420
Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) AO356_23425
DNA-binding response regulator, LuxR family, near polyamine transporter AO356_14380
  AO356_29835
N-carbamoylputrescine amidase (3.5.1.53) No genes
Ornithine decarboxylase (EC 4.1.1.17) AO356_07310
Predicted chaperone lipoprotein YacC, potentially involved in protein secretion No genes
Predicted polyamine sensor NspS, involved in biofilm formation No genes
Probable spermidine/putrescine substrate binding protein in Mollicutes No genes
Probable two-component sensor, near polyamine transporter AO356_14375
Putative GntR-family regulatory protein and aminotransferase near polyamine transporter No genes
Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) AO356_12080
  AO356_13155
  AO356_13160
  AO356_28350
  AO356_29815
Putrescine carbamoyltransferase (EC 2.1.3.6) No genes
Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) AO356_06300
  AO356_14385
Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) AO356_13165
Putrescine transport system permease protein PotH (TC 3.A.1.11.2) AO356_13170
Putrescine transport system permease protein PotI (TC 3.A.1.11.2) AO356_13175
Putrescine-ornithine antiporter No genes
Putrescine/proton symporter, putrescine/ornithine antiporter PotE No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), eukaryotic No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B No genes
Spermidine N1-acetyltransferase (EC 2.3.1.57) No genes
Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) AO356_06305
  AO356_14395
  AO356_25725
Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) AO356_06310
  AO356_14400
Spermidine synthase (EC 2.5.1.16) AO356_03115
Transcriptional regulator of catabolic arginine decarboxylase (adiA) No genes
Transcriptional regulator, MerR family, near polyamine transporter No genes
Transcriptional regulator, TetR family, associated with agmatine catabolism No genes
Transcriptional regulator, luxR family, associated with agmatine catabolism No genes

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