SEED Subsystem: DNA Repair Base Excision in Pseudomonas fluorescens FW300-N2C3

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC AO356_05490
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD AO356_26950
  AO356_27730
DNA ligase (EC 6.5.1.2) AO356_02540
  AO356_13660
DNA polymerase I (EC 2.7.7.7) AO356_11465
DNA polymerase II (EC 2.7.7.7) AO356_01325
DNA-3-methyladenine glycosylase (EC 3.2.2.20) AO356_11590
  AO356_19005
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) AO356_15285
  AO356_24415
Endonuclease III (EC 4.2.99.18) AO356_18345
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) AO356_17885
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) AO356_13270
Ku domain protein AO356_27725
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) AO356_06345
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 AO356_04635

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