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SEED Subsystem: DNA-replication in
Pseudomonas fluorescens FW300-N2C3
Experiments:
Add
Role
Gene
Name
ATP-dependent DNA helicase RecG (EC 3.6.1.-)
AO356
_12380
ATP-dependent DNA helicase RecQ
AO356
_04050
Arrested fork binding
No genes
Chromosomal replication initiator protein DnaA
AO356
_11645
AO356
_19110
Crossover junction endodeoxyribonuclease RuvC (
EC 3.1.22.4
)
AO356
_18015
DNA polymerase I (
EC 2.7.7.7
)
AO356
_11465
DNA polymerase II (
EC 2.7.7.7
)
AO356
_01325
DNA polymerase III alpha subunit (
EC 2.7.7.7
)
AO356
_05965
AO356
_15515
AO356
_21820
DNA polymerase III beta subunit (
EC 2.7.7.7
)
AO356
_11640
DNA polymerase III chi subunit (
EC 2.7.7.7
)
AO356
_17465
DNA polymerase III delta prime subunit (
EC 2.7.7.7
)
AO356
_20195
DNA polymerase III delta subunit (
EC 2.7.7.7
)
AO356
_15365
DNA polymerase III epsilon subunit (
EC 2.7.7.7
)
AO356
_14085
AO356
_24495
DNA polymerase III psi subunit (
EC 2.7.7.7
)
No genes
DNA polymerase III subunits gamma and tau (
EC 2.7.7.7
)
AO356
_02510
DNA polymerase III theta subunit (
EC 2.7.7.7
)
No genes
DNA primase (EC 2.7.7.-)
AO356
_14270
DNA primase (EC 2.7.7.-), phage-associated
No genes
DNA primase TraC (EC 2.7.7.-)
No genes
DNA repair protein RecN
AO356
_07510
DNA replication protein DnaC
No genes
DNA replication terminus site-binding protein
No genes
Exodeoxyribonuclease V alpha chain (
EC 3.1.11.5
)
AO356
_07910
Exodeoxyribonuclease V beta chain (
EC 3.1.11.5
)
AO356
_07915
Exodeoxyribonuclease V gamma chain (
EC 3.1.11.5
)
AO356
_07920
Helicase PriA essential for oriC/DnaA-independent DNA replication
AO356
_09440
Helicase loader DnaI
No genes
Holliday junction DNA helicase RuvA
AO356
_18020
Holliday junction DNA helicase RuvB
AO356
_18025
Primosomal protein I
No genes
Primosomal replication protein N
No genes
Primosomal replication protein N prime prime
No genes
RecA protein
AO356
_05670
Recombination protein RecR
AO356
_02495
Replicative DNA helicase (EC 3.6.1.-)
AO356
_08580
Replicative DNA helicase (EC 3.6.1.-) [SA14-24]
No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)
AO356
_06345
Transcription-repair coupling factor
AO356
_02270
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC101
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthomonas campestris pv. campestris strain 8004
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