SEED Subsystem: Polyamine Metabolism in Pseudomonas fluorescens FW300-N1B4

Experiments:

Role Gene Name  
4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19) Pf1N1B4_3024
  Pf1N1B4_3029
5'-methylthioadenosine nucleosidase (EC 3.2.2.16) No genes
ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) Pf1N1B4_2539
  Pf1N1B4_3028
  Pf1N1B4_694
Agmatinase (EC 3.5.3.11) Pf1N1B4_4717
  Pf1N1B4_525
Agmatine deiminase (EC 3.5.3.12) Pf1N1B4_1661
  Pf1N1B4_4325
  Pf1N1B4_4328
Agmatine/putrescine antiporter, associated with agmatine catabolism No genes
Arginine decarboxylase (EC 4.1.1.19) Pf1N1B4_1136
Arginine decarboxylase, catabolic (EC 4.1.1.19) No genes
Arginine/agmatine antiporter No genes
Arginine/ornithine antiporter No genes
Arginine/ornithine antiporter ArcD Pf1N1B4_3249
  Pf1N1B4_4214
  Pf1N1B4_613
  Pf1N1B4_614
Biosynthetic arginine decarboxylase (EC 4.1.1.19) Pf1N1B4_1296
Carbamate kinase (EC 2.7.2.2) Pf1N1B4_617
Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) Pf1N1B4_5137
Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) No genes
DNA-binding response regulator, LuxR family, near polyamine transporter Pf1N1B4_2537
N-carbamoylputrescine amidase (3.5.1.53) Pf1N1B4_4326
Ornithine decarboxylase (EC 4.1.1.17) Pf1N1B4_1136
Predicted chaperone lipoprotein YacC, potentially involved in protein secretion No genes
Predicted polyamine sensor NspS, involved in biofilm formation No genes
Probable spermidine/putrescine substrate binding protein in Mollicutes No genes
Probable two-component sensor, near polyamine transporter Pf1N1B4_2536
Putative GntR-family regulatory protein and aminotransferase near polyamine transporter No genes
Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) Pf1N1B4_2019
  Pf1N1B4_2259
  Pf1N1B4_2260
  Pf1N1B4_4248
  Pf1N1B4_4349
  Pf1N1B4_4716
  Pf1N1B4_4825
  Pf1N1B4_5600
Putrescine carbamoyltransferase (EC 2.1.3.6) No genes
Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) Pf1N1B4_2538
  Pf1N1B4_3027
  Pf1N1B4_691
Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) Pf1N1B4_2261
  Pf1N1B4_4352
Putrescine transport system permease protein PotH (TC 3.A.1.11.2) Pf1N1B4_2262
  Pf1N1B4_4351
Putrescine transport system permease protein PotI (TC 3.A.1.11.2) Pf1N1B4_2263
  Pf1N1B4_4350
Putrescine-ornithine antiporter No genes
Putrescine/proton symporter, putrescine/ornithine antiporter PotE Pf1N1B4_4994
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), eukaryotic No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B No genes
Spermidine N1-acetyltransferase (EC 2.3.1.57) No genes
Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) Pf1N1B4_2540
  Pf1N1B4_3026
Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) Pf1N1B4_2541
  Pf1N1B4_3025
Spermidine synthase (EC 2.5.1.16) Pf1N1B4_268
Transcriptional regulator of catabolic arginine decarboxylase (adiA) No genes
Transcriptional regulator, MerR family, near polyamine transporter No genes
Transcriptional regulator, TetR family, associated with agmatine catabolism No genes
Transcriptional regulator, luxR family, associated with agmatine catabolism No genes

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