SEED Subsystem: Nitrate and nitrite ammonification in Pseudomonas fluorescens FW300-N1B4

Experiments:

Role Gene Name  
Assimilatory nitrate reductase large subunit (EC:1.7.99.4) Pf1N1B4_3835
Cytochrome c nitrite reductase, small subunit NrfH No genes
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly No genes
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly No genes
Cytochrome c-type protein NapC No genes
Cytochrome c-type protein NrfB precursor No genes
Cytochrome c552 precursor (EC 1.7.2.2) No genes
Ferredoxin--nitrite reductase (EC 1.7.7.1) No genes
Ferredoxin-type protein NapF (periplasmic nitrate reductase) No genes
Ferredoxin-type protein NapG (periplasmic nitrate reductase) No genes
Nitrate ABC transporter, ATP-binding protein Pf1N1B4_5098
Nitrate ABC transporter, nitrate-binding protein Pf1N1B4_3841
  Pf1N1B4_5096
Nitrate ABC transporter, permease protein No genes
Nitrate reductase cytochrome c550-type subunit No genes
Nitrate/nitrite response regulator protein Pf1N1B4_5741
Nitrate/nitrite sensor protein (EC 2.7.3.-) Pf1N1B4_5740
Nitrate/nitrite transporter Pf1N1B4_3839
  Pf1N1B4_4622
  Pf1N1B4_5692
  Pf1N1B4_5736
  Pf1N1B4_5737
  Pf1N1B4_5738
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) Pf1N1B4_3837
  Pf1N1B4_5042
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) Pf1N1B4_3836
  Pf1N1B4_5041
Nitrite reductase probable [NAD(P)H] subunit (EC 1.7.1.4) No genes
Nitrite reductase probable electron transfer 4Fe-S subunit (EC 1.7.1.4) No genes
Nitrite transporter NirC No genes
Nitrite transporter from formate/nitrite family No genes
NrfC protein No genes
NrfD protein No genes
Periplasmic nitrate reductase component NapD No genes
Periplasmic nitrate reductase component NapE No genes
Periplasmic nitrate reductase component NapL No genes
Periplasmic nitrate reductase precursor (EC 1.7.99.4) No genes
Polyferredoxin NapH (periplasmic nitrate reductase) No genes
Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly No genes
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) Pf1N1B4_5735
Respiratory nitrate reductase beta chain (EC 1.7.99.4) Pf1N1B4_5734
Respiratory nitrate reductase delta chain (EC 1.7.99.4) Pf1N1B4_5733
Respiratory nitrate reductase gamma chain (EC 1.7.99.4) Pf1N1B4_5732
Respiratory nitrate reductase subunit, conjectural (EC 1.7.99.4) No genes
Response regulator NasT Pf1N1B4_3840

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