SEED Subsystem: Experimental tye in Pseudomonas fluorescens FW300-N1B4

Experiments:

Role Gene Name  
2H phosphoesterase superfamily protein Bsu1186 (yjcG) No genes
5-aminolevulinate synthase (EC 2.3.1.37) No genes
Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases, YtcI homolog No genes
Coproporphyrinogen III oxidase, aerobic (EC 1.3.3.3) Pf1N1B4_1907
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22) Pf1N1B4_3868
  Pf1N1B4_5783
  Pf1N1B4_5784
  Pf1N1B4_5785
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), divergent, putative No genes
Coproporphyrinogen III oxidase, oxygen-independent (EC 1.3.99.22), divergent, putative 2 No genes
Cytochrome c-type biogenesis protein CcdA (DsbD analog) No genes
Cytochrome c-type biogenesis protein CcsA/ResC No genes
DUF1801 domain-containing protein No genes
Ferrochelatase, protoheme ferro-lyase (EC 4.99.1.1) Pf1N1B4_2932
GNAT family acetyltransferase YjcF Pf1N1B4_4044
Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8) Pf1N1B4_2716
Glutamyl-tRNA reductase (EC 1.2.1.70) Pf1N1B4_2918
HemX protein, negative effector of steady-state concentration of glutamyl-tRNA reductase No genes
Homolog of E. coli HemY protein No genes
Hypothetical membrane protein, possible involvement in cytochrome functioning/assembly No genes
Hypothetical protein Q, similar to Chlorite dismutase No genes
Hypothetical protein SAV1831 No genes
Hypothetical protein SAV1869 No genes
Hypothetical protein, ydbS homolog No genes
Hypothetical protein, ydbT homolog No genes
Hypothetical, related to broad specificity phosphatases COG0406 No genes
Methyltransferase (EC 2.1.1.-) colocalized with Q No genes
Periplasmic/membrane protein associated with DUF414 No genes
Porphobilinogen deaminase (EC 2.5.1.61) Pf1N1B4_2185
Porphobilinogen synthase (EC 4.2.1.24) Pf1N1B4_2207
  Pf1N1B4_92
Possibly related to ydbT No genes
Precorrin-2 oxidase (EC 1.3.1.76) Pf1N1B4_4065
Protein of unknown function DUF414 No genes
Protoporphyrinogen IX oxidase, aerobic (EC 1.3.3.4) No genes
Protoporphyrinogen IX oxidase, oxygen-independent, HemG (EC 1.3.-.-) No genes
Putative acetyl esterase YjcH (EC 3.1.1.-) No genes
Putative lipoprotein SAV1865 No genes
Putative membrane protein Q2 colocalized with Q No genes
Putative nitroreductase family protein SACOL0874 No genes
Putative oxidoreductase ferredoxin-type protein, clusters with CPO No genes
Ribonuclease D (EC 3.1.26.3) Pf1N1B4_3345
Sirohydrochlorin cobaltochelatase (EC 4.99.1.3) No genes
Sirohydrochlorin ferrochelatase (EC 4.99.1.4) Pf1N1B4_4065
Small hypothetical protein Hyp1 No genes
Sua5 YciO YrdC YwlC family protein No genes
Uncharacterized SAV1743 homolog No genes
Uncharacterized protein Q1 colocalized with Q No genes
Uncharacterized protein UPF0344 No genes
Uncharacterized protein, homolog of B.subtilis yhgC No genes
Uroporphyrinogen III decarboxylase (EC 4.1.1.37) Pf1N1B4_1532
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Pf1N1B4_3834
  Pf1N1B4_4065
  Pf1N1B4_5773
Uroporphyrinogen-III synthase (EC 4.2.1.75) Pf1N1B4_2186
  Pf1N1B4_2187
Uroporphyrinogen-III synthase, divergent, Flavobacterial type (EC 4.2.1.75) No genes
Uroporphyrinogen-III synthase, divergent, Francisella type (EC 4.2.1.75) No genes
transmembrane protein, distant homology with ydbS No genes
transmembrane protein, distant homology with ydbT No genes

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