SEED Subsystem: DNA Repair Base Excision in Pseudomonas fluorescens FW300-N1B4

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC Pf1N1B4_3180
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD Pf1N1B4_4314
DNA ligase (EC 6.5.1.2) Pf1N1B4_2394
  Pf1N1B4_3857
DNA polymerase I (EC 2.7.7.7) Pf1N1B4_1875
DNA polymerase II (EC 2.7.7.7) Pf1N1B4_87
DNA-3-methyladenine glycosylase (EC 3.2.2.20) Pf1N1B4_1918
  Pf1N1B4_3492
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) Pf1N1B4_2687
  Pf1N1B4_4569
  Pf1N1B4_612
Endonuclease III (EC 4.2.99.18) Pf1N1B4_739
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) Pf1N1B4_668
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) Pf1N1B4_2309
Ku domain protein Pf1N1B4_4751
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) Pf1N1B4_3020
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 Pf1N1B4_3309

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