SEED Subsystem: DNA Repair Base Excision in Acidovorax sp. GW101-3H11

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC Ac3H11_4922
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) Ac3H11_2314
DNA polymerase I (EC 2.7.7.7) Ac3H11_1648
DNA polymerase II (EC 2.7.7.7) No genes
DNA-3-methyladenine glycosylase (EC 3.2.2.20) Ac3H11_4535
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) Ac3H11_47
Endonuclease III (EC 4.2.99.18) Ac3H11_1010
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) Ac3H11_2454
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) Ac3H11_3456
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) Ac3H11_1746
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 Ac3H11_3558
  Ac3H11_4402
  Ac3H11_773

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