SEED Subsystem: Proline, 4-hydroxyproline uptake and utilization in Xanthomonas campestris pv. campestris strain 8004

Experiments:

Role Gene Name  
1-pyrroline-4-hydroxy-2-carboxylate deaminase (EC 3.5.4.22) Xcc-8004.2129.1
4-hydroxyproline epimerase (EC 5.1.1.8) Xcc-8004.2125.1
Aldehyde dehydrogenase (EC 1.2.1.3) in 4-hydroxyproline catabolic gene cluster No genes
Amino acid permease in 4-hydroxyproline catabolic gene cluster No genes
D-amino acid dehydrogenase (EC 1.4.99.1) family protein in hydroxy-L-proline catabolic cluster No genes
D-amino-acid oxidase (EC 1.4.3.3) Xcc-8004.2126.1
D-proline reductase, 23 kDa subunit (EC 1.21.4.1) No genes
D-proline reductase, 26 kDa subunit (EC 1.21.4.1) No genes
D-proline reductase, 45 kDa subunit (EC 1.21.4.1) No genes
Delta 1-pyrroline-5-carboxylate dehydrogenase domain protein No genes
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) No genes
Dipeptidyl peptidase IV in 4-hydroxyproline catabolic gene cluster Xcc-8004.2136.1
Hypothetical, similar to sarcosine oxidase alpha subunit, 2Fe-2S domain Xcc-8004.2127.1
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) Xcc-8004.2130.1
L-Proline/Glycine betaine transporter ProP Xcc-8004.109.1
  Xcc-8004.3036.1
Microbial collagenase, secreted (EC 3.4.24.3) No genes
Not a Proline racemase, nor 4-hydroxyproline epimerase [missing catalytic residues] No genes
Predicted 4-hydroxyproline dipeptidase Xcc-8004.2131.1
Predicted regulator PutR for proline utilization, GntR family Xcc-8004.744.1
ProQ: influences osmotic activation of compatible solute ProP No genes
Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) Xcc-8004.4848.1
Proline iminopeptidase (EC 3.4.11.5) Xcc-8004.1646.1
  Xcc-8004.4219.1
Proline racemase (EC 5.1.1.4) No genes
Proline-specific permease proY No genes
Proline/sodium symporter PutP (TC 2.A.21.2.1) No genes
PutR, transcriptional activator of PutA and PutP No genes
Putative beta-galactosidase in 4-hydroxyproline catabolic gene cluster Xcc-8004.2137.1
Putative oxidoreductase in 4-hydroxyproline catabolic gene cluster Xcc-8004.2128.1
Similar to eukaryotic Peptidyl prolyl 4-hydroxylase, alpha subunit (EC 1.14.11.2) Xcc-8004.3644.1
  Xcc-8004.937.1
Transcriptional repressor of PutA and PutP No genes
Ureidoglycolate/malate/sulfolactate dehydrogenase family (EC 1.1.1.-) No genes
putPA fragment of control region No genes

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