Private Fitness
Home
Find Gene
BLAST
Experiments
Organisms
Help
SEED Subsystem: Thiamin biosynthesis in
Vibrio cholerae E7946 ATCC 55056
Experiments:
Add
Role
Gene
Name
1-deoxy-D-xylulose 5-phosphate synthase (
EC 2.2.1.7
)
CSW01
_04560
5-FCL-like protein
No genes
ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
No genes
Additional substrate-binding component of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
No genes
Cysteine desulfurase (
EC 2.8.1.7
), IscS subfamily
CSW01
_03885
Glycine oxidase ThiO (
EC 1.4.3.19
)
No genes
Hydroxyethylthiazole kinase (
EC 2.7.1.50
)
No genes
Hydroxymethylpyrimidine ABC transporter, ATPase component
No genes
Hydroxymethylpyrimidine ABC transporter, substrate-binding component
No genes
Hydroxymethylpyrimidine ABC transporter, transmembrane component
No genes
Hydroxymethylpyrimidine synthesis protein THI5
No genes
Phosphomethylpyrimidine kinase (
EC 2.7.4.7
)
No genes
Predicted hydroxymethylpyrimidine transporter CytX
No genes
Predicted thiamin transporter PnuT
No genes
Predicted thiamin transporter ThiT
No genes
Predicted thiazole transporter ThiU
No genes
Putative cysteine desulfurase, associated with tRNA 4-thiouridine synthase
No genes
Rhodanese-like domain required for thiamine synthesis
CSW01
_04585
Substrate-specific component ThiT of thiamin ECF transporter
No genes
Substrate-specific component ThiW of predicted thiazole ECF transporter
No genes
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
No genes
Sulfur carrier protein ThiS
CSW01
_00350
Sulfur carrier protein adenylyltransferase ThiF
CSW01
_00345
Thiamin ABC transporter, ATPase component
CSW01
_12855
Thiamin ABC transporter, substrate-binding component
CSW01
_12865
Thiamin ABC transporter, transmembrane component
CSW01
_12860
Thiamin biosynthesis protein ThiC
No genes
Thiamin pyrophosphokinase (
EC 2.7.6.2
)
No genes
Thiamin transport gene THI10
No genes
Thiamin-phosphate phosphatase (EC 3.1.3.-)
No genes
Thiamin-phosphate pyrophosphorylase (
EC 2.5.1.3
)
CSW01
_00340
Thiamin-phosphate synthase ThiN (
EC 2.5.1.3
)
No genes
Thiamin-regulated hypothetical deacetylase
No genes
Thiamin-regulated outer membrane receptor Omr1
No genes
Thiaminase II (
EC 3.5.99.2
)
No genes
Thiamine kinase (
EC 2.7.1.89
)
No genes
Thiamine-monophosphate kinase (
EC 2.7.4.16
)
CSW01
_11535
Thiazole biosynthesis protein ThiG
CSW01
_00355
Thiazole biosynthesis protein ThiH
No genes
Thiazole biosynthetic enzyme Thi4
No genes
Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
No genes
YjbQ (alternate ThiE)
No genes
tRNA S(4)U 4-thiouridine synthase (former ThiI)
CSW01
_04585
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC101
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthomonas campestris pv. campestris strain 8004
Go
Or view this subsystem at the SEED
(slow)