SEED Subsystem: Serine-glyoxylate cycle in Vibrio cholerae E7946 ATCC 55056

Experiments:

Role Gene Name  
3-ketoacyl-CoA thiolase (EC 2.3.1.16) No genes
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) CSW01_13560
5-FCL-like protein, but predicted not to be 5-formyltetrahydrofolate cyclo-ligase (5-FCL) No genes
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) CSW01_12545
Acetoacetyl-CoA reductase (EC 1.1.1.36) CSW01_17650
Acetyl-CoA acetyltransferase (EC 2.3.1.9) No genes
Aconitate hydratase (EC 4.2.1.3) No genes
Citrate synthase (EC 2.3.3.1) No genes
Citrate synthase (si) (EC 2.3.3.1) CSW01_10455
Enolase (EC 4.2.1.11) CSW01_12390
Formate--tetrahydrofolate ligase (EC 6.3.4.3) CSW01_17280
Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) CSW01_06585
Fumarate hydratase class I, anaerobic (EC 4.2.1.2) No genes
GDSL-like lipase/acylhydrolase No genes
Glycerate kinase (EC 2.7.1.31) CSW01_18660
Isocitrate lyase (EC 4.1.3.1) CSW01_03830
Malate dehydrogenase (EC 1.1.1.37) CSW01_02270
Malate synthase-related protein CSW01_18910
Malyl-CoA lyase (EC 4.1.3.24) No genes
Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) CSW01_09720
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) No genes
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) No genes
Methylene tetrahydromethanopterin dehydrogenase (EC 1.5.99.9) No genes
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) CSW01_09720
Methylmalonyl-CoA mutase (EC 5.4.99.2) No genes
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase (EC 3.5.4.27) No genes
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) CSW01_13810
Phosphoglyceromutase No genes
Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) No genes
Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) CSW01_04820
  CSW01_15340
Serine--glyoxylate aminotransferase (EC 2.6.1.45) No genes
Serine--pyruvate aminotransferase (EC 2.6.1.51) CSW01_02070
Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) CSW01_10440
  CSW01_13425
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) CSW01_10435
  CSW01_13430
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) CSW01_10415
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) CSW01_10420
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) No genes
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) No genes
crotonyl-CoA reductase No genes
cytosolic long-chain acyl-CoA thioester hydrolase family protein CSW01_18835
decarboxylase No genes
isobutyryl-CoA dehydrogenase No genes
low-specificity D-threonine aldolase No genes
polyhydroxyalkanoate synthesis repressor PhaR No genes
putative glycerate kinase No genes
putative isobutyryl-CoA mutase, chain B No genes

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