SEED Subsystem: DNA Repair Base Excision in Vibrio cholerae E7946 ATCC 55056

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) CSW01_04960
DNA polymerase I (EC 2.7.7.7) CSW01_00560
DNA polymerase II (EC 2.7.7.7) CSW01_06130
DNA-3-methyladenine glycosylase (EC 3.2.2.20) CSW01_08405
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) No genes
Endonuclease III (EC 4.2.99.18) CSW01_05145
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) CSW01_06240
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) CSW01_01175
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) CSW01_12240
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 CSW01_11950

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