SEED Subsystem: Conserved gene cluster associated with Met-tRNA formyltransferase in Vibrio cholerae E7946 ATCC 55056

Role	Gene	Name
16S rRNA m(5)C 967 methyltransferase (EC 2.1.1.-)	No genes
50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)	CSW01_16875
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	CSW01_07875
	CSW01_09230
	CSW01_18490
DNA topoisomerase I (EC 5.99.1.2)	CSW01_08695
GTP-sensing transcriptional pleiotropic repressor codY	No genes
Helicase PriA essential for oriC/DnaA-independent DNA replication	CSW01_13530
Hydrolase (HAD superfamily) in cluster with DUF1447	No genes
Inactive homolog of metal-dependent proteases, putative molecular chaperone	No genes
Methionyl-tRNA formyltransferase (EC 2.1.2.9)	CSW01_00230
Peptide deformylase (EC 3.5.1.88)	CSW01_00235
	CSW01_14750
Protein of unknown function DUF1447	No genes
Protein of unknown function Smg	CSW01_00250
Protein serine/threonine phosphatase PrpC, regulation of stationary phase	No genes
Ribonuclease HII (EC 3.1.26.4)	CSW01_11440
Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)	CSW01_03930
Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-)	No genes
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)	CSW01_03460
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	CSW01_13285
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake	CSW01_00245
Serine/threonine protein kinase PrkC, regulator of stationary phase	No genes
Serine/threonine protein kinase PrkC, regulator of stationary phase, short form	No genes
Similar to C-terminal Zn-finger domain of DNA topoisomerase I	CSW01_00255
Trk system potassium uptake protein TrkA	CSW01_00220
Uncharacterized protein with LysM domain, COG1652	CSW01_00240
YgjD/Kae1/Qri7 family, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	No genes
Zn-dependent hydrolase, RNA-metabolising	No genes
cytochrome d ubiquinol oxidase, subunit II-related protein	No genes
tRNA:m(5)U-54 MTase gid	No genes