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SEED Subsystem: Bacterial Chemotaxis in
Vibrio cholerae E7946 ATCC 55056
Experiments:
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Role
Gene
Name
Aerotaxis sensor receptor protein
CSW01
_02710
CSW01
_19055
Chemotaxis protein CheC -- inhibitor of MCP methylation
CSW01
_05505
CSW01
_05510
CSW01
_14930
Chemotaxis protein CheD
CSW01
_19525
Chemotaxis protein CheV (EC 2.7.3.-)
CSW01
_08050
CSW01
_10015
CSW01
_11235
CSW01
_18895
Chemotaxis protein CheX
CSW01
_01975
Chemotaxis protein methyltransferase CheR (
EC 2.1.1.80
)
CSW01
_11230
CSW01
_19530
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY
CSW01
_07000
CSW01
_07015
CSW01
_10330
CSW01
_19555
Chemotaxis response - phosphatase CheZ
CSW01
_10325
Chemotaxis response regulator protein-glutamate methylesterase CheB (
EC 3.1.1.61
)
CSW01
_07030
CSW01
_10315
CSW01
_19520
Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)
CSW01
_00915
Flagellar motor switch protein FliG
CSW01
_10645
Flagellar motor switch protein FliM
CSW01
_10610
Flagellar motor switch protein FliN
CSW01
_10605
Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)
CSW01
_06690
Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE
CSW01
_18855
Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)
CSW01
_09500
CSW01
_19535
Methyl-accepting chemotaxis protein II (aspartate chemoreceptor protein)
No genes
Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein)
No genes
Methyl-accepting chemotaxis protein IV (dipeptide chemoreceptor protein)
No genes
Positive regulator of CheA protein activity (CheW)
CSW01
_07035
CSW01
_10300
CSW01
_19540
CSW01
_19545
Ribose ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
No genes
Signal transduction histidine kinase CheA (EC 2.7.3.-)
CSW01
_07010
CSW01
_10320
CSW01
_19550
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC101
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthomonas campestris pv. campestris strain 8004
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