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SEED Subsystem: Oxidative stress in
Pseudomonas syringae pv. syringae B728a
Experiments:
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Role
Gene
Name
Alkyl hydroperoxide reductase subunit C-like protein
Psyr
_4877
Catalase (
EC 1.11.1.6
)
Psyr
_0280
Psyr
_1393
Psyr
_3353
Psyr
_4208
Psyr
_4522
DNA binding protein starved cells-like peroxide resistance protein
No genes
Fe2+/Zn2+ uptake regulation proteins
Psyr
_2141
Ferric uptake regulation protein
No genes
Ferric uptake regulation protein FUR
Psyr
_4198
Ferroxidase (
EC 1.16.3.1
)
Psyr
_1404
Fumarate and nitrate reduction regulatory protein
Psyr
_3425
Heme oxygenase HemO, associated with heme uptake
Psyr
_1104
Hydrogen peroxide-inducible genes activator
Psyr
_0202
Psyr
_3111
Iron-binding ferritin-like antioxidant protein
Psyr
_1404
Iron-responsive regulator Irr
No genes
Manganese superoxide dismutase (
EC 1.15.1.1
)
Psyr
_4152
Metallothionein
No genes
Nitrite-sensitive transcriptional repressor NsrR
No genes
NnrS protein involved in response to NO
No genes
Non-specific DNA-binding protein Dps
Psyr
_1404
Organic hydroperoxide resistance protein
Psyr
_3627
Organic hydroperoxide resistance transcriptional regulator
Psyr
_3626
Paraquat-inducible protein A
Psyr
_3043
Psyr
_3044
Paraquat-inducible protein B
Psyr
_3045
Peroxidase (
EC 1.11.1.7
)
Psyr
_4208
Peroxidase/catalase HPI (
EC 1.11.1.6
)
No genes
Peroxide stress regulator
No genes
Peroxide stress regulator PerR, FUR family
No genes
Phytochrome, two-component sensor histidine kinase (EC 2.7.3.-)
Psyr
_2385
Psyr
_3504
Probable peroxiredoxin (
EC 1.11.1.15
)
No genes
Redox-sensitive transcriptional activator SoxR
No genes
Redox-sensitive transcriptional regulator (AT-rich DNA-binding protein)
No genes
Regulatory protein SoxS
No genes
Rubrerythrin
No genes
Superoxide dismutase (
EC 1.15.1.1
)
No genes
Superoxide dismutase [Cu-Zn] precursor (
EC 1.15.1.1
)
Psyr
_1154
Superoxide dismutase [Fe] (
EC 1.15.1.1
)
Psyr
_4059
Superoxide dismutase [Mn/Fe] (
EC 1.15.1.1
)
No genes
Superoxide dismutase [Mn] (
EC 1.15.1.1
)
No genes
Superoxide reductase (
EC 1.15.1.2
)
No genes
Thioredoxin peroxidase 1 (EC 1.6.4.-)
No genes
Transcriptional regulator, Crp/Fnr family
No genes
Transcriptional regulator, FUR family
No genes
Zinc uptake regulation protein ZUR
Psyr
_0276
bacteriophytochrome heme oxygenase BphO
Psyr
_3505
superoxide dismutase [Fe-Zn] (
EC 1.15.1.1
)
No genes
transcriptional regulator, Crp/Fnr family
Psyr
_0243
transcriptional regulator, Fur family
No genes
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC101
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthomonas campestris pv. campestris strain 8004
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