SEED Subsystem: Choline and Betaine Uptake and Betaine Biosynthesis in Pseudomonas syringae pv. syringae B728a

Experiments:

Role Gene Name  
Alcohol dehydrogenase GbsB (type III ), essential for the utilization of choline (EC 1.1.1.1) No genes
Betaine aldehyde dehydrogenase (EC 1.2.1.8) Psyr_4733
Choline ABC transport system, ATP-binding protein OpuBA No genes
Choline ABC transport system, choline-binding protein OpuBC No genes
Choline ABC transport system, permease protein OpuBB No genes
Choline ABC transport system, permease protein OpuBD No genes
Choline binding protein A Psyr_4474
Choline binding protein D No genes
Choline dehydrogenase (EC 1.1.99.1) Psyr_4732
Choline-sulfatase (EC 3.1.6.6) Psyr_0029
GbcA Glycine betaine demethylase subunit A Psyr_4776
GbcB Glycine betaine demethylase subunit B Psyr_4775
Glycine betaine ABC transport system permease protein No genes
Glycine betaine ABC transport system, ATP-binding protein OpuAA (EC 3.6.3.32) No genes
Glycine betaine ABC transport system, glycine betaine-binding protein OpuAC No genes
Glycine betaine ABC transport system, permease protein OpuAB No genes
Glycine betaine ABC transport system, permease/glycine betaine-binding protein OpuABC No genes
Glycine betaine transporter OpuD No genes
Glycine betaine/L-proline ABC transporter, glycine betaine/L-proline- binding/permease protein Psyr_3758
HTH-type transcriptional regulator BetI Psyr_4734
High-affinity choline uptake protein BetT Psyr_4827
L-proline glycine betaine ABC transport system permease protein ProV (TC 3.A.1.12.1) Psyr_4249
  Psyr_4711
L-proline glycine betaine ABC transport system permease protein ProW (TC 3.A.1.12.1) Psyr_4250
  Psyr_4252
  Psyr_4710
L-proline glycine betaine binding ABC transporter protein ProX (TC 3.A.1.12.1) Psyr_0028
  Psyr_2916
  Psyr_4251
  Psyr_4709
Osmotically activated L-carnitine/choline ABC transporter, ATP-binding protein OpuCA No genes
Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCB No genes
Osmotically activated L-carnitine/choline ABC transporter, permease protein OpuCD No genes
Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC No genes
Sarcosine oxidase alpha subunit (EC 1.5.3.1) Psyr_2222
  Psyr_4715
Sarcosine oxidase beta subunit (EC 1.5.3.1) Psyr_2224
  Psyr_2330
  Psyr_4713
Sarcosine oxidase delta subunit (EC 1.5.3.1) Psyr_2223
  Psyr_4714
Sarcosine oxidase gamma subunit (EC 1.5.3.1) Psyr_2221
  Psyr_4716

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