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SEED Subsystem: Bacterial Chemotaxis in
Pseudomonas syringae pv. syringae B728a
Experiments:
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Role
Gene
Name
Aerotaxis sensor receptor protein
No genes
Chemotaxis protein CheC -- inhibitor of MCP methylation
Psyr
_0886
Chemotaxis protein CheD
Psyr
_0782
Chemotaxis protein CheV (EC 2.7.3.-)
Psyr
_1139
Psyr
_3297
Psyr
_3486
Chemotaxis protein CheX
No genes
Chemotaxis protein methyltransferase CheR (
EC 2.1.1.80
)
Psyr
_0783
Psyr
_2446
Psyr
_3485
Chemotaxis regulator - transmits chemoreceptor signals to flagelllar motor components CheY
Psyr
_0788
Psyr
_2448
Psyr
_3436
Psyr
_3496
Chemotaxis response - phosphatase CheZ
Psyr
_3435
Chemotaxis response regulator protein-glutamate methylesterase CheB (
EC 3.1.1.61
)
Psyr
_0781
Psyr
_3433
Dipeptide-binding ABC transporter, periplasmic substrate-binding component (TC 3.A.1.5.2)
Psyr
_0223
Psyr
_4234
Psyr
_4235
Psyr
_4236
Psyr
_4238
Flagellar motor switch protein FliG
Psyr
_3456
Flagellar motor switch protein FliM
Psyr
_3447
Flagellar motor switch protein FliN
Psyr
_3446
Galactose/methyl galactoside ABC transport system, D-galactose-binding periplasmic protein MglB (TC 3.A.1.2.3)
No genes
Maltose/maltodextrin ABC transporter, substrate binding periplasmic protein MalE
Psyr
_0762
Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)
Psyr
_0379
Psyr
_0380
Psyr
_0785
Psyr
_0860
Psyr
_0868
Psyr
_0905
Psyr
_1150
Psyr
_1303
Psyr
_1491
Psyr
_1539
Psyr
_1789
Psyr
_2109
Psyr
_2237
Psyr
_2315
Psyr
_2356
Psyr
_2634
Psyr
_2878
Psyr
_3114
Psyr
_3348
Psyr
_3351
Psyr
_4218
Psyr
_4706
Psyr
_5092
Psyr
_5093
Methyl-accepting chemotaxis protein II (aspartate chemoreceptor protein)
No genes
Methyl-accepting chemotaxis protein III (ribose and galactose chemoreceptor protein)
No genes
Methyl-accepting chemotaxis protein IV (dipeptide chemoreceptor protein)
No genes
Positive regulator of CheA protein activity (CheW)
Psyr
_0784
Psyr
_2215
Psyr
_3428
Ribose ABC transporter, periplasmic ribose-binding protein RbsB (TC 3.A.1.2.1)
Psyr
_2238
Signal transduction histidine kinase CheA (EC 2.7.3.-)
Psyr
_0786
Psyr
_3434
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter baumannii LAC-4
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cellulophaga baltica 18
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia amylovora T8
Erwinia tracheiphila HP pepo 2.2
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC100
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Klebsiella pneumoniae MKP103
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Methylophilus sp. DMC18
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea agglomerans CFBP13505 P0401
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas aeruginosa PA14
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas lactucae CFBP13502
Pseudomonas putida KT2440
Pseudomonas segetis P6
Pseudomonas simiae WCS417
Pseudomonas sp. BP01
Pseudomonas sp. DMC3
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas sp. SVBP6
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodanobacter sp000427505 FW510-R12
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingobium sp. HT1-2
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Synechocystis sp000284455 PCC 6803
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthobacter sp. DMC5
Xanthomonas campestris pv. campestris strain 8004
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