SEED Subsystem: Arginine and Ornithine Degradation in Pseudomonas syringae pv. syringae B728a

Experiments:

Role Gene Name  
Agmatinase (EC 3.5.3.11) No genes
Agmatine deiminase (EC 3.5.3.12) Psyr_4932
Arginase (EC 3.5.3.1) Psyr_2212
Arginine ABC transporter, ATP-binding protein ArtP No genes
Arginine ABC transporter, periplasmic arginine-binding protein ArtI No genes
Arginine ABC transporter, periplasmic arginine-binding protein ArtJ No genes
Arginine ABC transporter, permease protein ArtM No genes
Arginine ABC transporter, permease protein ArtQ Psyr_4913
Arginine N-succinyltransferase (EC 2.3.1.109) Psyr_3563
Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) Psyr_3564
Arginine N-succinyltransferase, beta subunit (EC 2.3.1.109) No genes
Arginine decarboxylase (EC 4.1.1.19) Psyr_2547
  Psyr_4247
Arginine decarboxylase, catabolic (EC 4.1.1.19) No genes
Arginine deiminase (EC 3.5.3.6) Psyr_2684
Arginine pathway regulatory protein ArgR, repressor of arg regulon Psyr_3566
Arginine permease RocE No genes
Arginine utilization protein RocB No genes
Arginine utilization regulatory protein RocR No genes
Arginine/agmatine antiporter No genes
Arginine/ornithine ABC transporter, ATP-binding protein AotP Psyr_3567
Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein Psyr_3571
Arginine/ornithine ABC transporter, permease protein AotM Psyr_3569
Arginine/ornithine ABC transporter, permease protein AotQ Psyr_3570
Arginine/ornithine antiporter ArcD Psyr_2683
Biosynthetic arginine decarboxylase (EC 4.1.1.19) Psyr_4381
Carbamate kinase (EC 2.7.2.2) Psyr_2686
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) Psyr_0506
Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) Psyr_3878
  Psyr_4911
Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1) No genes
Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) Psyr_3876
Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1) Psyr_3875
Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) Psyr_0974
  Psyr_3874
  Psyr_4912
N-carbamoylputrescine amidase (3.5.1.53) No genes
NADP-specific glutamate dehydrogenase (EC 1.4.1.4) No genes
Ornithine aminotransferase (EC 2.6.1.13) Psyr_2551
Ornithine carbamoyltransferase (EC 2.1.3.3) Psyr_2685
  Psyr_3901
Ornithine cyclodeaminase (EC 4.3.1.12) Psyr_2745
Ornithine decarboxylase (EC 4.1.1.17) Psyr_2547
  Psyr_4247
Putrescine aminotransferase (EC 2.6.1.82) No genes
Succinylarginine dihydrolase (EC 3.5.3.23) Psyr_3561
Succinylglutamate desuccinylase (EC 3.5.1.96) Psyr_3559
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) Psyr_3562
Succinylornithine transaminase (EC 2.6.1.81) Psyr_3565
Transcriptional regulator ArcR essential for anaerobic expression of the ADI pathway, Crp/Fnr family No genes
Transcriptional regulator of catabolic arginine decarboxylase (adiA) No genes

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