SEED Subsystem: Conserved gene cluster associated with Met-tRNA formyltransferase in Synechococcus elongatus PCC 7942

Experiments:

Role Gene Name  
16S rRNA m(5)C 967 methyltransferase (EC 2.1.1.-) No genes
50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF) Synpcc7942_1114 rbgA
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) Synpcc7942_1766 cydB
DNA topoisomerase I (EC 5.99.1.2) Synpcc7942_1416 topA
GTP-sensing transcriptional pleiotropic repressor codY No genes
Helicase PriA essential for oriC/DnaA-independent DNA replication Synpcc7942_0651 priA
Hydrolase (HAD superfamily) in cluster with DUF1447 No genes
Inactive homolog of metal-dependent proteases, putative molecular chaperone No genes
Methionyl-tRNA formyltransferase (EC 2.1.2.9) Synpcc7942_2110 fmt
Peptide deformylase (EC 3.5.1.88) Synpcc7942_1340 def
Protein of unknown function DUF1447 No genes
Protein of unknown function Smg No genes
Protein serine/threonine phosphatase PrpC, regulation of stationary phase No genes
Ribonuclease HII (EC 3.1.26.4) Synpcc7942_0879 rhnB
Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) Synpcc7942_1758
Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) No genes
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-) Synpcc7942_0261 rimI
Ribulose-phosphate 3-epimerase (EC 5.1.3.1) Synpcc7942_0604 rpe
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake Synpcc7942_0703 smf
Serine/threonine protein kinase PrkC, regulator of stationary phase No genes
Serine/threonine protein kinase PrkC, regulator of stationary phase, short form No genes
Similar to C-terminal Zn-finger domain of DNA topoisomerase I No genes
Trk system potassium uptake protein TrkA Synpcc7942_1081
  Synpcc7942_1265
Uncharacterized protein with LysM domain, COG1652 No genes
YgjD/Kae1/Qri7 family, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA No genes
Zn-dependent hydrolase, RNA-metabolising Synpcc7942_1846
cytochrome d ubiquinol oxidase, subunit II-related protein No genes
tRNA:m(5)U-54 MTase gid Synpcc7942_1315 gid

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