SEED Subsystem: DNA Repair Base Excision in Shewanella amazonensis SB2B

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) Sama_1516
DNA polymerase I (EC 2.7.7.7) Sama_0093
  Sama_2420 xni
DNA polymerase II (EC 2.7.7.7) Sama_1250
DNA-3-methyladenine glycosylase (EC 3.2.2.20) Sama_0027
  Sama_3551
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) No genes
Endonuclease III (EC 4.2.99.18) Sama_1836
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) Sama_1973 sbcB
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) Sama_0117
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) Sama_2737
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 Sama_1229
  Sama_2831

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