SEED Subsystem: DNA-replication in Shewanella amazonensis SB2B

Experiments:

Role Gene Name  
ATP-dependent DNA helicase RecG (EC 3.6.1.-) Sama_3375
ATP-dependent DNA helicase RecQ Sama_0333
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA Sama_0013 dnaA
  Sama_1916
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) Sama_1841 ruvC
DNA polymerase I (EC 2.7.7.7) Sama_0093
  Sama_2420 xni
DNA polymerase II (EC 2.7.7.7) Sama_1250
DNA polymerase III alpha subunit (EC 2.7.7.7) Sama_1154 dnaE
DNA polymerase III beta subunit (EC 2.7.7.7) Sama_0014
DNA polymerase III chi subunit (EC 2.7.7.7) Sama_0791
DNA polymerase III delta prime subunit (EC 2.7.7.7) Sama_2042
DNA polymerase III delta subunit (EC 2.7.7.7) Sama_2584
DNA polymerase III epsilon subunit (EC 2.7.7.7) Sama_1525
  Sama_1880
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) Sama_1310
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) Sama_0824
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN Sama_1026
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) Sama_1902
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) Sama_1901
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) Sama_1900
Helicase PriA essential for oriC/DnaA-independent DNA replication Sama_0445
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA Sama_1840 ruvA
Holliday junction DNA helicase RuvB Sama_1839 ruvB
Primosomal protein I No genes
Primosomal replication protein N Sama_3063
Primosomal replication protein N prime prime Sama_1247
RecA protein Sama_1046 recA
Recombination protein RecR Sama_1312 recR
Replicative DNA helicase (EC 3.6.1.-) Sama_3058
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) Sama_2737
Transcription-repair coupling factor Sama_1330

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