SEED Subsystem: Coenzyme B12 biosynthesis in Rhodospirillum rubrum S1H

Experiments:

Role Gene Name  
5,6-dimethylbenzimidazole synthase, flavin destructase family No genes
ATPase component CbiO of energizing module of cobalt ECF transporter No genes
Additional lipoprotein component of predicted cobalamin ECF transporter No genes
Additional substrate-specific component CbiN of cobalt ECF transporter No genes
Adenosylcobinamide amidohydrolase (EC 3.5.1.90) Rru_A0492
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) No genes
Adenosylcobinamide-phosphate synthase No genes
Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2) Rru_A0206
Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) Rru_A0207
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) Rru_A0669
CblX, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase No genes
CblY, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase No genes
CblZ, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase No genes
ChlD component of cobalt chelatase involved in B12 biosynthesis No genes
ChlI component of cobalt chelatase involved in B12 biosynthesis No genes
Cob(I)alamin adenosyltransferase (EC 2.5.1.17) Rru_A3367
Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17) No genes
Cob(II)alamin reductase No genes
CobN component of cobalt chelatase involved in B12 biosynthesis Rru_A3366
CobW GTPase involved in cobalt insertion for B12 biosynthesis Rru_A0671
Cobalamin biosynthesis protein CbiG No genes
Cobalamin biosynthesis protein CobG Rru_A3383
Cobalamin synthase No genes
Cobalamine-related hypothetical metal-binding protein CrdX Rru_A3547
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) Rru_A2990
Cobalt-precorrin-3b C17-methyltransferase Rru_A2989
Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) Rru_A3384
Cobalt-precorrin-6 synthase, anaerobic Rru_A2996
Cobalt-precorrin-6x reductase (EC 1.3.1.54) Rru_A2988
Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) Rru_A2992
Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) Rru_A2992
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) Rru_A2991
Cobyric acid synthase No genes
Cobyrinic acid A,C-diamide synthase Rru_A3359
Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter No genes
HoxN/HupN/NixA family cobalt transporter No genes
HupE-UreJ family cobalt transporter No genes
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) Rru_A2651
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) Rru_A0667
Optional hypothetical component of the B12 transporter BtuM No genes
Optional hypothetical component of the B12 transporter BtuN No genes
Outer membrane vitamin B12 receptor BtuB No genes
Precorrin-6A synthase (EC 2.1.1.152) Rru_A2970
Predicted adenosylcobinamide-phosphate guanylyltransferase CobY (EC 2.7.7.62) No genes
Predicted alpha-ribazole-5'-phosphate phosphatase CobZ (EC 3.1.3.73) No genes
Predicted alpha-ribazole-5-phosphate synthase CblS for cobalamin biosynthesis No genes
Predicted cobalt ABC transporter periplasmic component No genes
Predicted cobalt transporter CbtA No genes
Predicted cobalt transporter CbtC Rru_A0458
Predicted cobalt transporter in Bacteroides_Porphyromonas No genes
Predicted cobalt transporter in Mycobacteria No genes
Predicted cobalt transporter in Thermoplasma No genes
Predicted cobalt transporter in sulfate-reducing delta-proteobacteria No genes
Putative 2Fe-2S ferredoxin CbiW involved in B12 biosynthesis No genes
Sirohydrochlorin cobaltochelatase (EC 4.99.1.3) No genes
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) No genes
Substrate-specific component CbiM of cobalt ECF transporter No genes
Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole No genes
Substrate-specific component CbrT of predicted cobalamin ECF transporter No genes
Threonine kinase in B12 biosynthesis No genes
Transmembrane component CbiQ of energizing module of cobalt ECF transporter No genes
Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter No genes
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) Rru_A1933
  Rru_A3362
Vitamin B12 ABC transporter, ATPase component BtuD Rru_A0491
Vitamin B12 ABC transporter, B12-binding component BtuF Rru_A0489
Vitamin B12 ABC transporter, permease component BtuC Rru_A0490
  Rru_A3222

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