SEED Subsystem: DNA Repair Base Excision in Rhodanobacter denitrificans MT42

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) LRK55_RS10680
  LRK55_RS17660
DNA polymerase I (EC 2.7.7.7) LRK55_RS03615
  LRK55_RS06585
DNA polymerase II (EC 2.7.7.7) No genes
DNA-3-methyladenine glycosylase (EC 3.2.2.20) LRK55_RS09865
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) LRK55_RS14155
  LRK55_RS17955
Endonuclease III (EC 4.2.99.18) LRK55_RS01640
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) LRK55_RS17685
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) LRK55_RS10505
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) LRK55_RS18310
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 LRK55_RS10645

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Or view this subsystem at the SEED (slow)