SEED Subsystem: Arginine and Ornithine Degradation in Ralstonia solanacearum IBSBF1503

Experiments:

Role Gene Name  
Agmatinase (EC 3.5.3.11) RALBFv3_RS16300
Agmatine deiminase (EC 3.5.3.12) No genes
Arginase (EC 3.5.3.1) RALBFv3_RS10165
  RALBFv3_RS17310
Arginine ABC transporter, ATP-binding protein ArtP No genes
Arginine ABC transporter, periplasmic arginine-binding protein ArtI No genes
Arginine ABC transporter, periplasmic arginine-binding protein ArtJ No genes
Arginine ABC transporter, permease protein ArtM No genes
Arginine ABC transporter, permease protein ArtQ No genes
Arginine N-succinyltransferase (EC 2.3.1.109) No genes
Arginine N-succinyltransferase, alpha subunit (EC 2.3.1.109) No genes
Arginine N-succinyltransferase, beta subunit (EC 2.3.1.109) No genes
Arginine decarboxylase (EC 4.1.1.19) No genes
Arginine decarboxylase, catabolic (EC 4.1.1.19) No genes
Arginine deiminase (EC 3.5.3.6) No genes
Arginine pathway regulatory protein ArgR, repressor of arg regulon No genes
Arginine permease RocE No genes
Arginine utilization protein RocB No genes
Arginine utilization regulatory protein RocR No genes
Arginine/agmatine antiporter No genes
Arginine/ornithine ABC transporter, ATP-binding protein AotP No genes
Arginine/ornithine ABC transporter, periplasmic arginine/ornithine binding protein No genes
Arginine/ornithine ABC transporter, permease protein AotM No genes
Arginine/ornithine ABC transporter, permease protein AotQ No genes
Arginine/ornithine antiporter ArcD No genes
Biosynthetic arginine decarboxylase (EC 4.1.1.19) No genes
Carbamate kinase (EC 2.7.2.2) No genes
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) RALBFv3_RS08725
Histidine ABC transporter, ATP-binding protein HisP (TC 3.A.1.3.1) No genes
Histidine ABC transporter, histidine-binding periplasmic protein precursor HisJ (TC 3.A.1.3.1) No genes
Histidine ABC transporter, permease protein HisM (TC 3.A.1.3.1) No genes
Histidine ABC transporter, permease protein HisQ (TC 3.A.1.3.1) No genes
Lysine-arginine-ornithine-binding periplasmic protein precursor (TC 3.A.1.3.1) RALBFv3_RS21335
N-carbamoylputrescine amidase (3.5.1.53) No genes
NADP-specific glutamate dehydrogenase (EC 1.4.1.4) No genes
Ornithine aminotransferase (EC 2.6.1.13) No genes
Ornithine carbamoyltransferase (EC 2.1.3.3) RALBFv3_RS05185
Ornithine cyclodeaminase (EC 4.3.1.12) RALBFv3_RS08975
  RALBFv3_RS21325
  RALBFv3_RS21450
Ornithine decarboxylase (EC 4.1.1.17) No genes
Putrescine aminotransferase (EC 2.6.1.82) RALBFv3_RS17855
Succinylarginine dihydrolase (EC 3.5.3.23) No genes
Succinylglutamate desuccinylase (EC 3.5.1.96) No genes
Succinylglutamic semialdehyde dehydrogenase (EC 1.2.1.71) No genes
Succinylornithine transaminase (EC 2.6.1.81) No genes
Transcriptional regulator ArcR essential for anaerobic expression of the ADI pathway, Crp/Fnr family No genes
Transcriptional regulator of catabolic arginine decarboxylase (adiA) No genes

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