SEED Subsystem: Photorespiration (oxidative C2 cycle) in Rahnella sp. WP5

Experiments:

Role Gene Name  
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) EX31_RS04580
  EX31_RS07980
2-oxoglutarate/malate translocator EX31_RS01165
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) EX31_RS21510
Catalase (EC 1.11.1.6) EX31_RS11140
  EX31_RS14645
  EX31_RS19330
D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4) No genes
D-glycerate 3-kinase (EC 2.7.1.31), plant type No genes
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Expressed protein possibly involved in photorespiration No genes
Glycerate kinase (EC 2.7.1.31) EX31_RS04255
  EX31_RS04560
  EX31_RS07975
Glycine cleavage system H protein EX31_RS21515
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) EX31_RS21520
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE No genes
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF No genes
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD EX31_RS13925
Glycolate oxidase (EC 1.1.3.15) No genes
Glycolate permease No genes
Glyoxylate carboligase (EC 4.1.1.47) EX31_RS04590
Hydroxypyruvate reductase (EC 1.1.1.81) EX31_RS05925
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44) EX31_RS21100
Malate synthase (EC 2.3.3.9) EX31_RS11740
Malate synthase G (EC 2.3.3.9) No genes
Malyl-CoA lyase (EC 4.1.3.24) No genes
Phosphoglycolate phosphatase (EC 3.1.3.18) EX31_RS00320
  EX31_RS04700
Ribulose bisphosphate carboxylase (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) No genes
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39) No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) EX31_RS20585
Serine--glyoxylate aminotransferase (EC 2.6.1.45) No genes

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