SEED Subsystem: L-rhamnose utilization in Rahnella sp. WP5

Experiments:

Role Gene Name  
Aldehyde dehydrogenase A (EC 1.2.1.22) EX31_RS00250
Alfa-L-rhamnosidase (EC 3.2.1.40) EX31_RS06425
Alternative L-rhamnose isomerase (EC 5.3.1.14) No genes
Glycoside hydrolase family 2, sugar binding No genes
L-2,4-diketo-3-deoxyrhamnonate hydrolase No genes
L-2-keto-3-deoxyrhamnonate (l-KDR) aldolase No genes
L-2-keto-3-deoxyrhamnonate-(4)-dehydrogenase No genes
L-lactate dehydrogenase (EC 1.1.2.3) EX31_RS00640
  EX31_RS06770
L-rhamno-gamma-lactonase (EC 3.1.1.65) No genes
L-rhamnonate dehydratase (EC 4.2.1.90) No genes
L-rhamnose isomerase (EC 5.3.1.14) EX31_RS04180
L-rhamnose isomerase (EC 5.3.1.14) EX31_RS04180
L-rhamnose mutarotase EX31_RS04195
L-rhamnose operon regulatory protein RhaS EX31_RS00245
  EX31_RS04170
  EX31_RS06415
L-rhamnose operon transcriptional activator RhaR EX31_RS04165
L-rhamnose-1-dehydrogenase ( EC 1.1.1.173) No genes
L-rhamnose-proton symporter EX31_RS04160
Lactaldehyde dehydrogenase involved in fucose or rhamnose utilization (EC 1.2.1.22) EX31_RS04190
Lactaldehyde reductase (EC 1.1.1.77) No genes
Pedicted L-rhamnose permease, NCS1 Family No genes
Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF No genes
Predicted L-rhamnose ABC transporter, ATP-binding component EX31_RS00235
Predicted L-rhamnose ABC transporter, substrate-binding component EX31_RS00240
Predicted L-rhamnose ABC transporter, transmembrane component 1 EX31_RS00225
Predicted L-rhamnose ABC transporter, transmembrane component 2 EX31_RS00230
Predicted L-rhamnose mutarotase No genes
Predicted L-rhamnose permease RhaY EX31_RS06420
Predicted alpha-L-rhamnosidase No genes
Predicted lactaldehyde dehydrogenase (EC 1.2.1.22) No genes
Predicted regulator of rhamnose oligosacchoride utilization, DeoR family No genes
Predicted rhamnogalacturonan lyase in rhamnose utilization cluster No genes
Predicted rhamnogalacturonide-specific TRAP-type transporter, large transmembrane component RhiC No genes
Predicted rhamnogalacturonide-specific TRAP-type transporter, small transmembrane component RhiB No genes
Predicted rhamnogalacturonide-specific TRAP-type transporter, substrate-binding component RhiA No genes
Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 1 No genes
Predicted rhamnose oligosaccharide ABC transport system, permease component No genes
Predicted rhamnose oligosaccharide ABC transport system, permease component 2 No genes
Predicted rhamnose oligosaccharide ABC transport system, substrate-binding component No genes
Predicted rhamnose oligosaccharide ABC transporter, ATP-binding component 2 No genes
Predicted rhamnose oligosaccharide ABC transporter, permease component 1 No genes
Predicted rhamnose oligosaccharide ABC transporter, permease component 2 No genes
Predicted rhamnose oligosaccharide ABC transporter, substrate-binding component No genes
Predicted rhamnulose-1-phosphate aldolase (EC 4.1.2.19) No genes
Putative beta-glucuronidase No genes
Putative unsaturated glucuronyl hydrolase No genes
Rhamnogalacturonide transporter RhiT EX31_RS14150
  EX31_RS19805
  EX31_RS20335
Rhamnogalacturonides degradation protein RhiN EX31_RS14145
Rhamnulokinase (EC 2.7.1.5) EX31_RS04175
Rhamnulokinase RhaK in alpha-proteobacteria (EC 2.7.1.5) No genes
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) EX31_RS04185
Transcriptional regulator of rhamnose utilization, AraC family No genes
Transcriptional regulator of rhamnose utilization, DeoR family No genes
Transcriptional regulator of rhamnose utilization, GntR family No genes
Transcriptional regulator of rhamnose utilization, LacI family No genes
Transcriptional regulator of rhamnose utilization, LysR family No genes
rhamnogalacturonan acetylesterase EX31_RS10705

Or select organism:

Or view this subsystem at the SEED (slow)