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SEED Subsystem: Flagellum in
Rahnella sp. WP5
Experiments:
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Role
Gene
Name
Flagellar L-ring protein FlgH
EX31
_RS11285
Flagellar M-ring protein FliF
EX31
_RS09540
Flagellar P-ring protein FlgI
EX31
_RS11280
Flagellar assembly protein FliH
EX31
_RS09550
Flagellar basal-body P-ring formation protein FlgA
EX31
_RS11320
Flagellar basal-body rod modification protein FlgD
EX31
_RS11305
Flagellar basal-body rod protein FlgB
EX31
_RS11315
Flagellar basal-body rod protein FlgC
EX31
_RS11310
Flagellar basal-body rod protein FlgF
EX31
_RS11295
Flagellar basal-body rod protein FlgG
EX31
_RS11290
Flagellar biosynthesis protein FlgN
EX31
_RS11330
Flagellar biosynthesis protein FlhA
EX31
_RS11340
Flagellar biosynthesis protein FlhB
EX31
_RS11345
Flagellar biosynthesis protein FlhF
No genes
Flagellar biosynthesis protein FliC
EX31
_RS09455
Flagellar biosynthesis protein FliL
EX31
_RS09570
Flagellar biosynthesis protein FliO
No genes
Flagellar biosynthesis protein FliP
EX31
_RS09590
Flagellar biosynthesis protein FliQ
EX31
_RS09595
Flagellar biosynthesis protein FliR
EX31
_RS09600
Flagellar biosynthesis protein FliS
EX31
_RS09465
Flagellar biosynthesis protein FliT
EX31
_RS09470
Flagellar biosynthesis protein FliZ
EX31
_RS09445
Flagellar hook protein FlgE
EX31
_RS11300
Flagellar hook-associated protein 3
No genes
Flagellar hook-associated protein FlgK
EX31
_RS11270
Flagellar hook-associated protein FlgL
EX31
_RS11265
Flagellar hook-associated protein FliD
EX31
_RS09460
Flagellar hook-basal body complex protein FliE
EX31
_RS09535
Flagellar hook-length control protein FliK
EX31
_RS09565
Flagellar motor rotation protein MotA
EX31
_RS11415
Flagellar motor rotation protein MotB
EX31
_RS11410
Flagellar motor switch protein FliG
EX31
_RS09545
Flagellar motor switch protein FliM
EX31
_RS09575
Flagellar motor switch protein FliN
EX31
_RS09580
Flagellar protein FlbB
No genes
Flagellar protein FlbD
No genes
Flagellar protein FlgJ [peptidoglycan hydrolase] (EC 3.2.1.-)
EX31
_RS11275
Flagellar protein FlhE
EX31
_RS11335
Flagellar protein FliJ
EX31
_RS09560
Flagellar regulatory protein FleQ
No genes
Flagellar sensor histidine kinase FleS
No genes
Flagellar synthesis regulator FleN
No genes
Flagellar trans-acting factor FliX
No genes
Flagellar transcriptional activator FlhC
EX31
_RS11420
Flagellar transcriptional activator FlhD
EX31
_RS11425
Flagellin protein FlaA
No genes
Flagellin protein FlaB
No genes
Flagellin protein FlaC
No genes
Flagellin protein FlaD
No genes
Flagellin protein FlaE
No genes
Flagellin protein FlaF
No genes
Flagellin protein FlaG
No genes
Flagellum-specific ATP synthase FliI
EX31
_RS09555
Negative regulator of flagellin synthesis
No genes
Negative regulator of flagellin synthesis FlgM
EX31
_RS11325
RNA polymerase sigma factor RpoD
EX31
_RS08195
RNA polymerase sigma factor for flagellar operon
EX31
_RS09450
RNA polymerase sigma-54 factor RpoN
EX31
_RS05375
EX31
_RS12400
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC101
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthomonas campestris pv. campestris strain 8004
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