SEED Subsystem: DNA Repair Base Excision in Rahnella sp. WP5

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC No genes
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD No genes
DNA ligase (EC 6.5.1.2) EX31_RS20160
DNA polymerase I (EC 2.7.7.7) EX31_RS13095
  EX31_RS15905
DNA polymerase II (EC 2.7.7.7) EX31_RS03740
DNA-3-methyladenine glycosylase (EC 3.2.2.20) EX31_RS05880
  EX31_RS06950
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) No genes
Endonuclease III (EC 4.2.99.18) EX31_RS06590
Endonuclease VIII EX31_RS23405
Exodeoxyribonuclease I (EC 3.1.11.1) EX31_RS17885
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) EX31_RS14455
Ku domain protein No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) EX31_RS13470
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 EX31_RS21775

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