SEED Subsystem: Conserved gene cluster associated with Met-tRNA formyltransferase in Rahnella sp. WP5

Role	Gene	Name
16S rRNA m(5)C 967 methyltransferase (EC 2.1.1.-)	No genes
50S ribosomal subunit maturation GTPase RbgA (B. subtilis YlqF)	No genes
Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-)	EX31_RS23465
DNA topoisomerase I (EC 5.99.1.2)	EX31_RS09895
GTP-sensing transcriptional pleiotropic repressor codY	No genes
Helicase PriA essential for oriC/DnaA-independent DNA replication	EX31_RS14225
Hydrolase (HAD superfamily) in cluster with DUF1447	No genes
Inactive homolog of metal-dependent proteases, putative molecular chaperone	No genes
Methionyl-tRNA formyltransferase (EC 2.1.2.9)	EX31_RS15980
Peptide deformylase (EC 3.5.1.88)	EX31_RS15975
Protein of unknown function DUF1447	No genes
Protein of unknown function Smg	EX31_RS15965
Protein serine/threonine phosphatase PrpC, regulation of stationary phase	No genes
Ribonuclease HII (EC 3.1.26.4)	EX31_RS12965
Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-)	EX31_RS20525
Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-)	EX31_RS15985
Ribosomal-protein-S18p-alanine acetyltransferase (EC 2.3.1.-)	EX31_RS04110
Ribulose-phosphate 3-epimerase (EC 5.1.3.1)	EX31_RS04705
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake	EX31_RS15970
Serine/threonine protein kinase PrkC, regulator of stationary phase	No genes
Serine/threonine protein kinase PrkC, regulator of stationary phase, short form	No genes
Similar to C-terminal Zn-finger domain of DNA topoisomerase I	EX31_RS15960
Trk system potassium uptake protein TrkA	EX31_RS15990
Uncharacterized protein with LysM domain, COG1652	No genes
YgjD/Kae1/Qri7 family, required for threonylcarbamoyladenosine (t(6)A) formation in tRNA	No genes
Zn-dependent hydrolase, RNA-metabolising	No genes
cytochrome d ubiquinol oxidase, subunit II-related protein	No genes
tRNA:m(5)U-54 MTase gid	No genes