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SEED Subsystem: Valine degradation in
Rhodopseudomonas palustris CGA009
Experiments:
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Role
Gene
Name
3-hydroxyacyl-CoA dehydrogenase (
EC 1.1.1.35
)
TX73
_004220
TX73
_018155
TX73
_019255
3-hydroxyisobutyrate dehydrogenase (
EC 1.1.1.31
)
TX73
_017835
3-hydroxyisobutyryl-CoA hydrolase (
EC 3.1.2.4
)
TX73
_017840
Branched-chain acyl-CoA dehydrogenase (
EC 1.3.99.12
)
TX73
_017845
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit (
EC 1.2.4.4
)
No genes
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (
EC 1.2.4.4
)
No genes
Branched-chain amino acid aminotransferase (
EC 2.6.1.42
)
TX73
_022650
TX73
_023855
Butyrate kinase (
EC 2.7.2.7
)
No genes
Butyryl-CoA dehydrogenase (
EC 1.3.99.2
)
TX73
_002490
TX73
_003825
TX73
_005120
TX73
_006350
TX73
_008280
TX73
_011025
TX73
_011920
TX73
_019235
TX73
_023655
Dihydrolipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (
EC 2.3.1.168
)
No genes
Dihydrolipoamide dehydrogenase of branched-chain alpha-keto acid dehydrogenase (
EC 1.8.1.4
)
No genes
Enoyl-CoA hydratase (
EC 4.2.1.17
)
TX73
_001990
TX73
_002165
TX73
_002395
TX73
_002500
TX73
_002510
TX73
_003370
TX73
_004930
TX73
_006355
TX73
_007240
TX73
_008810
TX73
_009040
TX73
_009055
TX73
_009185
TX73
_009315
TX73
_011975
TX73
_014325
TX73
_017085
TX73
_019255
TX73
_019650
TX73
_022390
TX73
_022490
Enoyl-CoA hydratase [valine degradation] (
EC 4.2.1.17
)
TX73
_017810
TX73
_017875
Lipoamide acyltransferase component of branched-chain alpha-keto acid dehydrogenase complex (EC 2.3.1.-)
No genes
Methylmalonate-semialdehyde dehydrogenase (
EC 1.2.1.27
)
TX73
_017860
Predicted transcriptional regulator of leucine degradation pathway, MerR family
No genes
Probable acyl-CoA dehydrogenase (
EC 1.3.99.3
)
No genes
Transcriptional regulator BkdR of isoleucine and valine catabolism operon
TX73
_021105
phosphotransbutyrylase (
EC 2.3.1.19
)
No genes
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC101
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthomonas campestris pv. campestris strain 8004
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