SEED Subsystem: Nitrogen fixation in Rhodopseudomonas palustris CGA009

Experiments:

Role Gene Name  
4Fe-4S ferredoxin, nitrogenase-associated TX73_023955
  TX73_024040
  TX73_024050
AnfO protein, required for Mo- and V-independent nitrogenase TX73_007365
AnfR protein, required for Mo- and V-independent nitrogenase TX73_007360
Cysteine desulfurase (EC 2.8.1.7), NifS subfamily TX73_023935
Homocitrate synthase (EC 2.3.3.14) TX73_023930
Homocitrate synthase alpha subunit (EC 2.3.3.14) No genes
Homocitrate synthase omega subunit (EC 2.3.3.14) No genes
Iron-sulfur cluster assembly scaffold protein NifU TX73_023940
LRV (FeS)4 cluster domain protein clustered with nitrogenase cofactor synthesis TX73_024025
NifB-domain protein, type 2 TX73_012175
NifM protein No genes
NifT protein TX73_024010
NifX-associated protein TX73_023965
NifY protein No genes
NifZ protein TX73_024015
  TX73_024020
Nitrogenase (iron-iron) alpha chain (EC 1.18.6.1) TX73_007380
Nitrogenase (iron-iron) beta chain (EC 1.18.6.1) TX73_007370
Nitrogenase (iron-iron) delta chain (EC 1.18.6.1) TX73_007375
Nitrogenase (iron-iron) reductase and maturation protein AnfH TX73_007385
Nitrogenase (iron-iron) transcriptional regulator TX73_007390
Nitrogenase (molybdenum-iron) alpha chain (EC 1.18.6.1) TX73_013650
  TX73_023990
Nitrogenase (molybdenum-iron) beta chain (EC 1.18.6.1) TX73_023985
Nitrogenase (molybdenum-iron) reductase and maturation protein NifH TX73_023995
Nitrogenase (molybdenum-iron)-specific transcriptional regulator NifA TX73_024055
Nitrogenase (vanadium-iron) alpha chain (EC 1.18.6.1) TX73_007075
Nitrogenase (vanadium-iron) beta chain (EC 1.18.6.1) TX73_007085
Nitrogenase (vanadium-iron) delta chain (EC 1.18.6.1) TX73_007080
Nitrogenase (vanadium-iron) reductase and maturation protein VnfH TX73_007065
Nitrogenase (vanadium-iron) transcriptional regulator VnfA TX73_007055
Nitrogenase FeMo-cofactor carrier protein NifX TX73_023970
Nitrogenase FeMo-cofactor scaffold and assembly protein NifE TX73_023980
Nitrogenase FeMo-cofactor scaffold and assembly protein NifN TX73_023975
Nitrogenase FeMo-cofactor synthesis FeS core scaffold and assembly protein NifB TX73_012170
  TX73_013640
  TX73_024045
Nitrogenase FeMo-cofactor synthesis molybdenum delivery protein NifQ TX73_023950
Nitrogenase cofactor carrier protein NafY No genes
Nitrogenase stabilizing/protective protein NifW TX73_023925
Nitrogenase vanadium-cofactor synthesis protein VnfE TX73_007050
  TX73_012140
  TX73_012215
Nitrogenase vanadium-cofactor synthesis protein VnfN TX73_007045
Nitrogenase vanadium-cofactor synthesis protein VnfX TX73_007040
Nitrogenase vanadium-cofactor synthesis protein VnfY TX73_007095
Nitrogenase-associated protein NifO TX73_005145
Transcriptional repressor of nif and glnA operons No genes
probable iron binding protein from the HesB_IscA_SufA family in Nif operon TX73_023945
  TX73_024035

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