SEED Subsystem: DNA Repair Base Excision in Pseudomonas sp. BP01

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC JOY50_RS24060
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD JOY50_RS26485 ligD
DNA ligase (EC 6.5.1.2) JOY50_RS00235 ligA
  JOY50_RS09855 ligB
DNA polymerase I (EC 2.7.7.7) JOY50_RS21110 polA
DNA polymerase II (EC 2.7.7.7) JOY50_RS10610
DNA-3-methyladenine glycosylase (EC 3.2.2.20) JOY50_RS08270
  JOY50_RS23845
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) JOY50_RS17675
  JOY50_RS23455
  JOY50_RS24805
Endonuclease III (EC 4.2.99.18) JOY50_RS23995 nth
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) JOY50_RS14335 sbcB
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) JOY50_RS20760 mutM
Ku domain protein JOY50_RS03275
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) JOY50_RS11745 recJ
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 JOY50_RS14600 ung

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