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SEED Subsystem: DNA-replication in
Pseudomonas sp. BP01
Experiments:
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Role
Gene
Name
ATP-dependent DNA helicase RecG (EC 3.6.1.-)
JOY50
_RS08945
recG
ATP-dependent DNA helicase RecQ
JOY50
_RS01155
recQ
Arrested fork binding
No genes
Chromosomal replication initiator protein DnaA
JOY50
_RS08350
dnaA
Crossover junction endodeoxyribonuclease RuvC (
EC 3.1.22.4
)
JOY50
_RS01825
ruvC
DNA polymerase I (
EC 2.7.7.7
)
JOY50
_RS21110
polA
DNA polymerase II (
EC 2.7.7.7
)
JOY50
_RS10610
DNA polymerase III alpha subunit (
EC 2.7.7.7
)
JOY50
_RS21460
JOY50
_RS21815
JOY50
_RS23675
dnaE
DNA polymerase III beta subunit (
EC 2.7.7.7
)
JOY50
_RS08345
dnaN
DNA polymerase III chi subunit (
EC 2.7.7.7
)
JOY50
_RS11260
DNA polymerase III delta prime subunit (
EC 2.7.7.7
)
JOY50
_RS16760
DNA polymerase III delta subunit (
EC 2.7.7.7
)
JOY50
_RS21680
holA
DNA polymerase III epsilon subunit (
EC 2.7.7.7
)
JOY50
_RS07075
dnaQ
JOY50
_RS17885
DNA polymerase III psi subunit (
EC 2.7.7.7
)
No genes
DNA polymerase III subunits gamma and tau (
EC 2.7.7.7
)
JOY50
_RS00145
dnaX
DNA polymerase III theta subunit (
EC 2.7.7.7
)
No genes
DNA primase (EC 2.7.7.-)
JOY50
_RS18075
dnaG
DNA primase (EC 2.7.7.-), phage-associated
No genes
DNA primase TraC (EC 2.7.7.-)
No genes
DNA repair protein RecN
JOY50
_RS26735
recN
DNA replication protein DnaC
No genes
DNA replication terminus site-binding protein
No genes
Exodeoxyribonuclease V alpha chain (
EC 3.1.11.5
)
JOY50
_RS27630
recD
Exodeoxyribonuclease V beta chain (
EC 3.1.11.5
)
JOY50
_RS27635
recB
Exodeoxyribonuclease V gamma chain (
EC 3.1.11.5
)
JOY50
_RS27640
recC
Helicase PriA essential for oriC/DnaA-independent DNA replication
JOY50
_RS09255
Helicase loader DnaI
No genes
Holliday junction DNA helicase RuvA
JOY50
_RS01820
ruvA
Holliday junction DNA helicase RuvB
JOY50
_RS01815
ruvB
Primosomal protein I
No genes
Primosomal replication protein N
No genes
Primosomal replication protein N prime prime
No genes
RecA protein
JOY50
_RS23780
recA
Recombination protein RecR
JOY50
_RS00135
recR
Replicative DNA helicase (EC 3.6.1.-)
JOY50
_RS17350
dnaB
Replicative DNA helicase (EC 3.6.1.-) [SA14-24]
No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-)
JOY50
_RS11745
recJ
Transcription-repair coupling factor
JOY50
_RS25100
mfd
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter baumannii LAC-4
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cellulophaga baltica 18
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia amylovora T8
Erwinia tracheiphila HP pepo 2.2
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC100
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Klebsiella pneumoniae MKP103
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Methylophilus sp. DMC18
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea agglomerans CFBP13505 P0401
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas aeruginosa MRSN321
Pseudomonas aeruginosa PA14
Pseudomonas aeruginosa PUPa3
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas lactucae CFBP13502
Pseudomonas orientalis W4I3
Pseudomonas putida KT2440
Pseudomonas segetis P6
Pseudomonas simiae WCS417
Pseudomonas sp. BP01
Pseudomonas sp. DMC3
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas sp. SVBP6
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodanobacter sp000427505 FW510-R12
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingobium sp. HT1-2
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Synechocystis sp000284455 PCC 6803
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthobacter sp. DMC5
Xanthomonas campestris pv. campestris strain 8004
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