SEED Subsystem: DNA Repair Base Excision in Pseudomonas fluorescens SBW25-INTG

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC PFLU_RS06485
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD PFLU_RS14185
DNA ligase (EC 6.5.1.2) PFLU_RS22480
  PFLU_RS28115
DNA polymerase I (EC 2.7.7.7) PFLU_RS00395
DNA polymerase II (EC 2.7.7.7) PFLU_RS10185
DNA-3-methyladenine glycosylase (EC 3.2.2.20) PFLU_RS00060
  PFLU_RS17070
  PFLU_RS18450
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) PFLU_RS23955
  PFLU_RS26680
Endonuclease III (EC 4.2.99.18) PFLU_RS05740
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) PFLU_RS24210
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) PFLU_RS28515
Ku domain protein PFLU_RS14190
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) PFLU_RS24515
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 PFLU_RS07110

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Or view this subsystem at the SEED (slow)