SEED Subsystem: Coenzyme B12 biosynthesis in Pseudomonas fluorescens SBW25-INTG

Experiments:

Role Gene Name  
5,6-dimethylbenzimidazole synthase, flavin destructase family No genes
ATPase component CbiO of energizing module of cobalt ECF transporter No genes
Additional lipoprotein component of predicted cobalamin ECF transporter No genes
Additional substrate-specific component CbiN of cobalt ECF transporter No genes
Adenosylcobinamide amidohydrolase (EC 3.5.1.90) No genes
Adenosylcobinamide-phosphate guanylyltransferase (EC 2.7.7.62) PFLU_RS22000
Adenosylcobinamide-phosphate synthase No genes
Aerobic cobaltochelatase CobS subunit (EC 6.6.1.2) No genes
Aerobic cobaltochelatase CobT subunit (EC 6.6.1.2) No genes
Alpha-ribazole-5'-phosphate phosphatase (EC 3.1.3.73) PFLU_RS21990
CblX, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase No genes
CblY, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase No genes
CblZ, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase No genes
ChlD component of cobalt chelatase involved in B12 biosynthesis PFLU_RS13050
ChlI component of cobalt chelatase involved in B12 biosynthesis PFLU_RS13045
Cob(I)alamin adenosyltransferase (EC 2.5.1.17) PFLU_RS22030
Cob(I)alamin adenosyltransferase PduO (EC 2.5.1.17) No genes
Cob(II)alamin reductase No genes
CobN component of cobalt chelatase involved in B12 biosynthesis PFLU_RS13040
CobW GTPase involved in cobalt insertion for B12 biosynthesis PFLU_RS13035
Cobalamin biosynthesis protein CbiG PFLU_RS02990
Cobalamin biosynthesis protein CobG PFLU_RS02975
Cobalamin synthase No genes
Cobalamine-related hypothetical metal-binding protein CrdX No genes
Cobalt-precorrin-2 C20-methyltransferase (EC 2.1.1.130) PFLU_RS02985
Cobalt-precorrin-3b C17-methyltransferase PFLU_RS02990
Cobalt-precorrin-4 C11-methyltransferase (EC 2.1.1.133) PFLU_RS13015
Cobalt-precorrin-6 synthase, anaerobic No genes
Cobalt-precorrin-6x reductase (EC 1.3.1.54) PFLU_RS02965
Cobalt-precorrin-6y C15-methyltransferase [decarboxylating] (EC 2.1.1.-) PFLU_RS02970
Cobalt-precorrin-6y C5-methyltransferase (EC 2.1.1.-) PFLU_RS02970
Cobalt-precorrin-8x methylmutase (EC 5.4.1.2) PFLU_RS02980
Cobyric acid synthase No genes
Cobyrinic acid A,C-diamide synthase PFLU_RS22025
Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter No genes
HoxN/HupN/NixA family cobalt transporter No genes
HupE-UreJ family cobalt transporter No genes
L-threonine 3-O-phosphate decarboxylase (EC 4.1.1.81) PFLU_RS22010
Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase (EC 2.4.2.21) PFLU_RS21995
Optional hypothetical component of the B12 transporter BtuM No genes
Optional hypothetical component of the B12 transporter BtuN No genes
Outer membrane vitamin B12 receptor BtuB PFLU_RS12670
  PFLU_RS26850
Precorrin-6A synthase (EC 2.1.1.152) PFLU_RS11980
Predicted adenosylcobinamide-phosphate guanylyltransferase CobY (EC 2.7.7.62) No genes
Predicted alpha-ribazole-5'-phosphate phosphatase CobZ (EC 3.1.3.73) No genes
Predicted alpha-ribazole-5-phosphate synthase CblS for cobalamin biosynthesis No genes
Predicted cobalt ABC transporter periplasmic component No genes
Predicted cobalt transporter CbtA PFLU_RS13025
Predicted cobalt transporter CbtC No genes
Predicted cobalt transporter in Bacteroides_Porphyromonas No genes
Predicted cobalt transporter in Mycobacteria No genes
Predicted cobalt transporter in Thermoplasma No genes
Predicted cobalt transporter in sulfate-reducing delta-proteobacteria No genes
Putative 2Fe-2S ferredoxin CbiW involved in B12 biosynthesis No genes
Sirohydrochlorin cobaltochelatase (EC 4.99.1.3) No genes
Sirohydrochlorin cobaltochelatase CbiK (EC 4.99.1.3) No genes
Substrate-specific component CbiM of cobalt ECF transporter No genes
Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole No genes
Substrate-specific component CbrT of predicted cobalamin ECF transporter No genes
Threonine kinase in B12 biosynthesis No genes
Transmembrane component CbiQ of energizing module of cobalt ECF transporter No genes
Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter No genes
Uroporphyrinogen-III methyltransferase (EC 2.1.1.107) PFLU_RS18505
  PFLU_RS22590
Vitamin B12 ABC transporter, ATPase component BtuD No genes
Vitamin B12 ABC transporter, B12-binding component BtuF PFLU_RS26855
Vitamin B12 ABC transporter, permease component BtuC No genes

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