SEED Subsystem: KDO2-Lipid A biosynthesis in Parabacteroides merdae CL09T00C40

Experiments:

Role Gene Name  
2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55) HMPREF1078_RS15875
3-deoxy-D-manno-octulosonate 8-phosphate phosphatase (EC 3.1.3.45) HMPREF1078_RS00030
3-deoxy-D-manno-octulosonic-acid transferase (EC 2.-.-.-) No genes
3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) HMPREF1078_RS15745
Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase (EC 2.3.1.129) HMPREF1078_RS13670
  HMPREF1078_RS13940
Arabinose 5-phosphate isomerase (EC 5.3.1.13) HMPREF1078_RS06000
LPS-assembly lipoprotein RlpB precursor (Rare lipoprotein B) No genes
Lipid A biosynthesis (KDO) 2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-) No genes
Lipid A biosynthesis lauroyl acyltransferase (EC 2.3.1.-) HMPREF1078_RS10690
Lipid A export ATP-binding/permease protein MsbA (EC 3.6.3.25) No genes
Lipid-A-disaccharide synthase (EC 2.4.1.182) HMPREF1078_RS04540
Lipopolysaccharide ABC transporter, ATP-binding protein LptB HMPREF1078_RS17070
LptA, protein essential for LPS transport across the periplasm No genes
O-antigen flippase Wzx HMPREF1078_RS03960
Oligosaccharide repeat unit polymerase Wzy HMPREF1078_RS10465
Predicted hydrolase of the metallo-beta-lactamase superfamily, clustered with KDO2-Lipid A biosynthesis genes No genes
Protein of unknown function DUF1009 clustered with KDO2-Lipid A biosynthesis genes No genes
Tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) HMPREF1078_RS13030
UDP-2,3-diacylglucosamine hydrolase (EC 3.6.1.-) No genes
UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (EC 3.5.1.-) No genes
UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) No genes
UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) No genes
regulator of length of O-antigen component of lipopolysaccharide chains No genes

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