SEED Subsystem: DNA-replication in Parabacteroides merdae CL09T00C40

Experiments:

Role Gene Name  
ATP-dependent DNA helicase RecG (EC 3.6.1.-) HMPREF1078_RS12765
ATP-dependent DNA helicase RecQ HMPREF1078_RS00505
  HMPREF1078_RS01195
  HMPREF1078_RS01280
  HMPREF1078_RS17040
  HMPREF1078_RS19875
  HMPREF1078_RS19880
Arrested fork binding No genes
Chromosomal replication initiator protein DnaA HMPREF1078_RS10740
Crossover junction endodeoxyribonuclease RuvC (EC 3.1.22.4) HMPREF1078_RS13315
DNA polymerase I (EC 2.7.7.7) HMPREF1078_RS06335
DNA polymerase II (EC 2.7.7.7) No genes
DNA polymerase III alpha subunit (EC 2.7.7.7) HMPREF1078_RS12110
DNA polymerase III beta subunit (EC 2.7.7.7) HMPREF1078_RS01975
DNA polymerase III chi subunit (EC 2.7.7.7) No genes
DNA polymerase III delta prime subunit (EC 2.7.7.7) HMPREF1078_RS07875
DNA polymerase III delta subunit (EC 2.7.7.7) HMPREF1078_RS02280
DNA polymerase III epsilon subunit (EC 2.7.7.7) No genes
DNA polymerase III psi subunit (EC 2.7.7.7) No genes
DNA polymerase III subunits gamma and tau (EC 2.7.7.7) HMPREF1078_RS14045
DNA polymerase III theta subunit (EC 2.7.7.7) No genes
DNA primase (EC 2.7.7.-) HMPREF1078_RS01620
  HMPREF1078_RS03105
  HMPREF1078_RS05085
  HMPREF1078_RS05125
  HMPREF1078_RS16265
  HMPREF1078_RS17535
  HMPREF1078_RS17970
DNA primase (EC 2.7.7.-), phage-associated No genes
DNA primase TraC (EC 2.7.7.-) No genes
DNA repair protein RecN HMPREF1078_RS02000
DNA replication protein DnaC No genes
DNA replication terminus site-binding protein No genes
Exodeoxyribonuclease V alpha chain (EC 3.1.11.5) No genes
Exodeoxyribonuclease V beta chain (EC 3.1.11.5) No genes
Exodeoxyribonuclease V gamma chain (EC 3.1.11.5) No genes
Helicase PriA essential for oriC/DnaA-independent DNA replication HMPREF1078_RS13050
Helicase loader DnaI No genes
Holliday junction DNA helicase RuvA HMPREF1078_RS13015
Holliday junction DNA helicase RuvB HMPREF1078_RS06175
Primosomal protein I No genes
Primosomal replication protein N No genes
Primosomal replication protein N prime prime No genes
RecA protein HMPREF1078_RS00095
Recombination protein RecR HMPREF1078_RS07615
Replicative DNA helicase (EC 3.6.1.-) HMPREF1078_RS01615
  HMPREF1078_RS02100
  HMPREF1078_RS17530
Replicative DNA helicase (EC 3.6.1.-) [SA14-24] No genes
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) HMPREF1078_RS07725
Transcription-repair coupling factor HMPREF1078_RS02110

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