SEED Subsystem: Serine-glyoxylate cycle in Phaeobacter inhibens DSM 17395

Experiments:

Role Gene Name  
3-ketoacyl-CoA thiolase (EC 2.3.1.16) No genes
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) PGA1_c11700
  PGA1_c16050
5-FCL-like protein, but predicted not to be 5-formyltetrahydrofolate cyclo-ligase (5-FCL) No genes
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) PGA1_c21820
Acetoacetyl-CoA reductase (EC 1.1.1.36) No genes
Acetyl-CoA acetyltransferase (EC 2.3.1.9) No genes
Aconitate hydratase (EC 4.2.1.3) PGA1_c18830
Citrate synthase (EC 2.3.3.1) No genes
Citrate synthase (si) (EC 2.3.3.1) PGA1_c16970
  PGA1_c28860
Enolase (EC 4.2.1.11) PGA1_c11420
Formate--tetrahydrofolate ligase (EC 6.3.4.3) PGA1_c05990
Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) No genes
Fumarate hydratase class I, anaerobic (EC 4.2.1.2) No genes
GDSL-like lipase/acylhydrolase PGA1_c33095
Glycerate kinase (EC 2.7.1.31) PGA1_c35670
Isocitrate lyase (EC 4.1.3.1) No genes
Malate dehydrogenase (EC 1.1.1.37) PGA1_c03650
Malate synthase-related protein No genes
Malyl-CoA lyase (EC 4.1.3.24) PGA1_c30490
Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) PGA1_c06010
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) PGA1_c10330
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) PGA1_c10320
Methylene tetrahydromethanopterin dehydrogenase (EC 1.5.99.9) No genes
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) PGA1_c06010
Methylmalonyl-CoA mutase (EC 5.4.99.2) PGA1_c21510
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase (EC 3.5.4.27) No genes
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) PGA1_c01140
Phosphoglyceromutase No genes
Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) No genes
Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) PGA1_c21600
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) PGA1_c11870
  PGA1_c24580
Serine--glyoxylate aminotransferase (EC 2.6.1.45) PGA1_c23940
Serine--pyruvate aminotransferase (EC 2.6.1.51) No genes
Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) PGA1_c03760
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) PGA1_c03780
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) PGA1_c03610
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) PGA1_c03630
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) PGA1_c06210
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) PGA1_c06200
crotonyl-CoA reductase No genes
cytosolic long-chain acyl-CoA thioester hydrolase family protein No genes
decarboxylase No genes
isobutyryl-CoA dehydrogenase No genes
low-specificity D-threonine aldolase No genes
polyhydroxyalkanoate synthesis repressor PhaR No genes
putative glycerate kinase No genes
putative isobutyryl-CoA mutase, chain B No genes

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