SEED Subsystem: Polyamine Metabolism in Phaeobacter inhibens DSM 17395

Experiments:

Role Gene Name  
4-aminobutyraldehyde dehydrogenase (EC 1.2.1.19) No genes
5'-methylthioadenosine nucleosidase (EC 3.2.2.16) No genes
ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) PGA1_c31310
Agmatinase (EC 3.5.3.11) PGA1_c19920
  PGA1_c19930
  PGA1_c00300
  PGA1_c00310
Agmatine deiminase (EC 3.5.3.12) PGA1_c26490
Agmatine/putrescine antiporter, associated with agmatine catabolism No genes
Arginine decarboxylase (EC 4.1.1.19) PGA1_c11650
  PGA1_c03800
Arginine decarboxylase, catabolic (EC 4.1.1.19) No genes
Arginine/agmatine antiporter No genes
Arginine/ornithine antiporter No genes
Arginine/ornithine antiporter ArcD PGA1_c11410
  PGA1_c14590
  PGA1_c21720
  PGA1_c23560
  PGA1_c23580
  PGA1_c24240
  PGA1_c24470
  PGA1_c26280
  PGA1_c28950
  PGA1_c29810
  PGA1_c31490
  PGA1_c31930
  PGA1_c05380
  PGA1_c05810
  PGA1_c00920
  PGA1_c00950
Biosynthetic arginine decarboxylase (EC 4.1.1.19) No genes
Carbamate kinase (EC 2.7.2.2) No genes
Carboxynorspermidine decarboxylase, putative (EC 4.1.1.-) No genes
Carboxynorspermidine dehydrogenase, putative (EC 1.1.1.-) No genes
DNA-binding response regulator, LuxR family, near polyamine transporter No genes
N-carbamoylputrescine amidase (3.5.1.53) No genes
Ornithine decarboxylase (EC 4.1.1.17) PGA1_c11650
  PGA1_c03800
Predicted chaperone lipoprotein YacC, potentially involved in protein secretion No genes
Predicted polyamine sensor NspS, involved in biofilm formation No genes
Probable spermidine/putrescine substrate binding protein in Mollicutes No genes
Probable two-component sensor, near polyamine transporter No genes
Putative GntR-family regulatory protein and aminotransferase near polyamine transporter No genes
Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) PGA1_c34420
Putrescine carbamoyltransferase (EC 2.1.3.6) No genes
Putrescine transport ATP-binding protein PotA (TC 3.A.1.11.1) PGA1_c31300
Putrescine transport ATP-binding protein PotG (TC 3.A.1.11.2) PGA1_c34430
Putrescine transport system permease protein PotH (TC 3.A.1.11.2) PGA1_c34440
Putrescine transport system permease protein PotI (TC 3.A.1.11.2) PGA1_c34450
Putrescine-ornithine antiporter No genes
Putrescine/proton symporter, putrescine/ornithine antiporter PotE No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), eukaryotic No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1A No genes
S-adenosylmethionine decarboxylase proenzyme (EC 4.1.1.50), prokaryotic class 1B PGA1_c14480
Spermidine N1-acetyltransferase (EC 2.3.1.57) No genes
Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1) PGA1_c31290
Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1) PGA1_c31280
Spermidine synthase (EC 2.5.1.16) PGA1_c14470
Transcriptional regulator of catabolic arginine decarboxylase (adiA) No genes
Transcriptional regulator, MerR family, near polyamine transporter No genes
Transcriptional regulator, TetR family, associated with agmatine catabolism No genes
Transcriptional regulator, luxR family, associated with agmatine catabolism No genes

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