SEED Subsystem: TCA Cycle in Pedobacter sp. GW460-11-11-14-LB5

Experiments:

Role Gene Name  
2-oxoglutarate dehydrogenase E1 component (EC 1.2.4.2) CA265_RS17530
Aconitate hydratase (EC 4.2.1.3) CA265_RS16405
Aconitate hydratase 2 (EC 4.2.1.3) CA265_RS16400
Aconitate hydratase X, predicted No genes
Aconitate hydratase large subunit (EC 4.2.1.3) No genes
Aconitate hydratase small subunit (EC 4.2.1.3) No genes
Archaeal succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) No genes
Archaeal succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) No genes
Citrate lyase gamma chain, acyl carrier protein (EC 4.1.3.6) No genes
Citrate synthase (si) (EC 2.3.3.1) CA265_RS08845
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) CA265_RS05155
Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4) CA265_RS24150
Dihydrolipoamide dehydrogenase of pyruvate dehydrogenase complex (EC 1.8.1.4) No genes
Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61) CA265_RS17525
Fumarate hydratase class I (EC 4.2.1.2) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) No genes
Fumarate hydratase class II (EC 4.2.1.2) CA265_RS23855
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42) No genes
Isocitrate dehydrogenase [NAD] (EC 1.1.1.41) No genes
Malate dehydrogenase (EC 1.1.1.37) CA265_RS03080
Malate:quinone oxidoreductase (EC 1.1.5.4) CA265_RS17145
Putative Dihydrolipoamide dehydrogenase (EC 1.8.1.4) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 CA265_RS15615
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) CA265_RS23065
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) CA265_RS23070
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) CA265_RS15540
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) CA265_RS04300
Transcriptional regulator of succinyl CoA synthetase operon No genes
hypothetical protein that often co-occurs with aconitase No genes

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