SEED Subsystem: L-Arabinose utilization in Pedobacter sp. GW460-11-11-14-LB5

Experiments:

Role Gene Name  
2-ketoglutaric semialdehyde dehydrogenase (EC 1.2.1.26) No genes
Alpha-L-arabinofuranosidase II precursor (EC 3.2.1.55) CA265_RS01510
Alpha-N-arabinofuranosidase (EC 3.2.1.55) CA265_RS13840
Alpha-N-arabinofuranosidase 2 (EC 3.2.1.55) CA265_RS13845
  CA265_RS20595
Alpha-N-arabinofuranosidase II (EC 3.2.1.55) No genes
Alpha-arabinosides ABC transport system, permease protein 1 No genes
Alpha-arabinosides ABC transport system, permease protein 2 No genes
Alpha-arabinosides ABC transport system, substrate-binding protein No genes
Alternative L-arabinose isomerase (EC 5.3.1.4) No genes
Arabinan endo-1,5-alpha-L-arabinosidase (EC 3.2.1.99) No genes
Arabinose operon protein AraL No genes
Arabinose operon regulatory protein No genes
Arabinose-proton symporter No genes
Arabinose-regulated TonB-dependent outer membrane receptor No genes
Hypothetical glycoside hydrolase, family 43, similar to arabinosidase CA265_RS06060
  CA265_RS13860
Hypothetical phosphoglucomutase family hydrolase in arabinose utilization cluster No genes
L-2-keto-3-deoxyarabonate dehydratase (EC 4.2.1.43) No genes
L-arabinolactonase (EC 3.1.1.15) No genes
L-arabinose 1-dehydrogenase (EC 1.1.1.46) No genes
L-arabinose isomerase (EC 5.3.1.4) CA265_RS08615
L-arabinose transport ATP-binding protein AraG (TC 3.A.1.2.2) No genes
L-arabinose transport system permease protein (TC 3.A.1.2.2) No genes
L-arabinose-binding periplasmic protein precursor AraF (TC 3.A.1.2.2) No genes
L-arabinose-specific 1-epimerase (mutarotase) CA265_RS09560
L-arabonate dehydratase (EC 4.2.1.25) No genes
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) CA265_RS08620
Possible GPH family transporter (TC 2.A.2) for arabinosides No genes
Predicted L-arabinose ABC transport system, ATP-binding protein No genes
Predicted L-arabinose ABC transport system, periplasmic arabinose-binding protein No genes
Predicted L-arabinose ABC transport system, permease protein 1 No genes
Predicted L-arabinose ABC transport system, permease protein 2 No genes
Predicted L-arabinose isomerase (EC 5.3.1.4) No genes
Predicted arabinose ABC transporter, permease protein 1 No genes
Predicted arabinose ABC transporter, permease protein 2 No genes
Predicted arabinose ABC transporter, substrate binding protein No genes
Predicted glycerol-1-phosphate dehydrogenase, arabinose operon No genes
Protein AraJ precursor CA265_RS00645
Putative oxidoreductase in arabinose utilization cluster No genes
Ribulokinase (EC 2.7.1.16) CA265_RS08625
Transcriptional regulator of the arabinose operon in Shewanella, GntR family No genes
Transcriptional repressor of arabinoside utilization operon, GntR family No genes
alternative Ribulokinase (EC 2.7.1.16) No genes

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