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SEED Subsystem: ECF class transporters in
Pedobacter sp. GW460-11-11-14-LB5
Experiments:
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Role
Gene
Name
ATPase component BioM of energizing module of biotin ECF transporter
CA265
_RS07485
ATPase component CbiO of energizing module of cobalt ECF transporter
No genes
ATPase component NikO of energizing module of nickel ECF transporter
No genes
ATPase component STY3232 of energizing module of queuosine-regulated ECF transporter
No genes
ATPase component STY3233 of energizing module of queuosine-regulated ECF transporter
No genes
ATPase component of energizing module of predicted pantothenate ECF transporter
No genes
ATPase component of energizing module of predicted queuosine-regulated ECF transporter
No genes
ATPase component of general energizing module of ECF transporters
No genes
Additional substrate-specific component CbiN of cobalt ECF transporter
No genes
Additional substrate-specific component NikN of nickel ECF transporter
No genes
Candidate substrate-specific domain of ECF transporters in Mycobacteria
No genes
Duplicated ATPase component BL0693 of energizing module of predicted ECF transporter
No genes
Duplicated ATPase component CbrU of energizing module of predicted cobalamin ECF transporter
No genes
Duplicated ATPase component Cce_1530 of energizing module of predicted ECF transporter
No genes
Duplicated ATPase component Kcr_0336 of energizing module of predicted ECF transporter
No genes
Duplicated ATPase component MTH454 of energizing module of predicted ECF transporter
No genes
Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter
No genes
Duplicated ATPase component SS1136 of energizing module of predicted ECF transporter
No genes
Duplicated ATPase component TTE1589 of energizing module of predicted methylthioadenosine ECF transporter
No genes
Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
No genes
Duplicated ATPase component glr2054 of energizing module of predicted ECF transporter
No genes
Duplicated ATPase component of energizing module of predicted B12-regulated ECF transporter for dimethylbenzimidazole
No genes
Duplicated ATPase component of energizing module of predicted ECF transporter in Mycobacteria
No genes
Duplicated ATPase component of energizing module of predicted pyridoxine-related ECF transporter
No genes
Duplicated ATPase component of energizing module of predicted thiazole ECF transporter
No genes
Duplicated ATPase component of energizing module of predicted tryptophan ECF transporter
No genes
Duplicated ATPase component of energizing module of riboflavin ECF transporter
No genes
Substrate-specific component BL0695 of predicted ECF transporter
No genes
Substrate-specific component BioY of biotin ECF transporter
No genes
Substrate-specific component CbiM of cobalt ECF transporter
No genes
Substrate-specific component CblT of predicted B12-regulated ECF transporter for dimethylbenzimidazole
No genes
Substrate-specific component CbrT of predicted cobalamin ECF transporter
No genes
Substrate-specific component Cce_1529 of predicted ECF transporter
No genes
Substrate-specific component FolT of folate ECF transporter
No genes
Substrate-specific component Kcr_0335 of predicted ECF transporter
No genes
Substrate-specific component MTH452 of predicted ECF transporter
No genes
Substrate-specific component MtsA of methionine-regulated ECF transporter
No genes
Substrate-specific component NiaX of predicted niacin ECF transporter
No genes
Substrate-specific component NikM of nickel ECF transporter
No genes
Substrate-specific component PAM0308 of predicted lipoate ECF transporter
No genes
Substrate-specific component PanT of predicted pantothenate ECF transporter
No genes
Substrate-specific component PdxU of predicted pyridoxine ECF transporter
No genes
Substrate-specific component PdxU2 of predicted pyridoxin-related ECF transporter
No genes
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
No genes
Substrate-specific component RibU of riboflavin ECF transporter
No genes
Substrate-specific component ST1137 of predicted ECF transporter
No genes
Substrate-specific component STY3230 of queuosine-regulated ECF transporter
No genes
Substrate-specific component TTE1586 of predicted methylthioadenosine ECF transporter
No genes
Substrate-specific component ThiT of thiamin ECF transporter
No genes
Substrate-specific component ThiW of predicted thiazole ECF transporter
No genes
Substrate-specific component TrpP of tryptophan ECF transporter
No genes
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
No genes
Substrate-specific component glr2052 of predicted ECF transporter
No genes
Transmembrane component BL0694 of energizing module of predicted ECF transporter
No genes
Transmembrane component BioN of energizing module of biotin ECF transporter
No genes
Transmembrane component CbiQ of energizing module of cobalt ECF transporter
No genes
Transmembrane component CbrV of energizing module of predicted cobalamin ECF transporter
No genes
Transmembrane component Cce_1531 of energizing module of predicted ECF transporter
No genes
Transmembrane component Kcr_0337 of energizing module of predicted ECF transporter
No genes
Transmembrane component MTH453 of energizing module of predicted ECF transporter
No genes
Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter
No genes
Transmembrane component NikQ of energizing module of nickel ECF transporter
No genes
Transmembrane component SS1135 of energizing module of predicted ECF transporter
No genes
Transmembrane component STY3231 of energizing module of queuosine-regulated ECF transporter
No genes
Transmembrane component TTE1588 of energizing module of predicted methylthioadenosine ECF transporter
No genes
Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
No genes
Transmembrane component glr2053 of energizing module of predicted ECF transporter
No genes
Transmembrane component of energizing module of ECF transporters in Cyanobacteria
No genes
Transmembrane component of energizing module of ECF transporters in Mycobacteria
No genes
Transmembrane component of energizing module of predicted B12-regulated ECF transporter for dimethylbenzimidazole
No genes
Transmembrane component of energizing module of predicted pantothenate ECF transporter
No genes
Transmembrane component of energizing module of predicted pyridoxine-related ECF transporter
No genes
Transmembrane component of energizing module of predicted queuosine-regulated ECF transporter
No genes
Transmembrane component of energizing module of predicted tryptophan ECF transporter
No genes
Transmembrane component of energizing module of riboflavin ECF transporter
No genes
Transmembrane component of general energizing module of ECF transporters
No genes
Or select organism:
Acidovorax sp. GW101-3H11
Acinetobacter radioresistens SK82
Agrobacterium fabrum C58
Alteromonas macleodii MIT1002
Azospirillum brasilense Sp245
Azospirillum sp. SherDot2
Bacteroides ovatus ATCC 8483
Bacteroides stercoris CC31F
Bacteroides thetaiotaomicron VPI-5482
Bifidobacterium breve UCC2003
Bosea sp. OAE506
Brevundimonas sp. GW460-12-10-14-LB2
Burkholderia phytofirmans PsJN
Castellaniella sp019104865 MT123
Caulobacter crescentus NA1000
Caulobacter crescentus NA1000 Δfur
Cupriavidus basilensis FW507-4G11
Dechlorosoma suillum PS
Desulfovibrio vulgaris Hildenborough JW710
Desulfovibrio vulgaris Miyazaki F
Dickeya dadantii 3937
Dickeya dianthicola 67-19
Dickeya dianthicola ME23
Dinoroseobacter shibae DFL-12
Dyella japonica UNC79MFTsu3.2
Echinicola vietnamensis KMM 6221, DSM 17526
Enterobacter asburiae PDN3
Enterobacter sp. TBS_079
Erwinia tracheiphila SCR3
Escherichia coli BL21
Escherichia coli BW25113
Escherichia coli ECOR27
Escherichia coli ECOR38
Escherichia coli ECRC101
Escherichia coli ECRC101
Escherichia coli ECRC102
Escherichia coli ECRC62
Escherichia coli ECRC98
Escherichia coli ECRC99
Escherichia coli HS(pFamp)R (ATCC 700891)
Escherichia coli Nissle 1917
Escherichia fergusonii Becca
Fusobacterium nucleatum SB010
Herbaspirillum seropedicae SmR1
Hydrogenophaga sp. GW460-11-11-14-LB1
Kangiella aquimarina DSM 16071
Klebsiella michiganensis M5al
Lysobacter sp. OAE881
Magnetospirillum magneticum AMB-1
Marinobacter adhaerens HP15
Methanococcus maripaludis JJ
Methanococcus maripaludis S2
Mucilaginibacter yixingensis YX-36 DSM 26809
Mycobacterium tuberculosis H37Rv
Pantoea sp. MT58
Parabacteroides merdae CL09T00C40
Paraburkholderia bryophila 376MFSha3.1
Paraburkholderia graminis OAS925
Paraburkholderia sabiae LMG 24235
Pectobacterium carotovorum WPP14
Pedobacter sp. GW460-11-11-14-LB5
Phaeobacter inhibens DSM 17395
Phocaeicola dorei CL03T12C01
Phocaeicola vulgatus CL09T03C04
Pontibacter actiniarum KMM 6156, DSM 19842
Pseudomonas fluorescens FW300-N1B4
Pseudomonas fluorescens FW300-N2C3
Pseudomonas fluorescens FW300-N2E2
Pseudomonas fluorescens FW300-N2E3
Pseudomonas fluorescens GW456-L13
Pseudomonas fluorescens SBW25
Pseudomonas fluorescens SBW25-INTG
Pseudomonas putida KT2440
Pseudomonas simiae WCS417
Pseudomonas sp. RS175
Pseudomonas sp. S08-1
Pseudomonas stutzeri RCH2
Pseudomonas syringae pv. syringae B728a
Pseudomonas syringae pv. syringae B728a ΔmexB
Rahnella sp. WP5
Ralstonia solanacearum GMI1000
Ralstonia solanacearum IBSBF1503
Ralstonia solanacearum PSI07
Ralstonia solanacearum UW163
Ralstonia sp. UNC404CL21Col
Rhizobium sp. OAE497
Rhodanobacter denitrificans FW104-10B01
Rhodanobacter denitrificans MT42
Rhodanobacter sp. FW510-T8
Rhodopseudomonas palustris CGA009
Rhodospirillum rubrum S1H
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868
Serratia liquefaciens MT49
Shewanella amazonensis SB2B
Shewanella loihica PV-4
Shewanella oneidensis MR-1
Shewanella sp. ANA-3
Sinorhizobium meliloti 1021
Sphingomonas koreensis DSMZ 15582
Synechococcus elongatus PCC 7942
Variovorax sp. OAS795
Variovorax sp. SCN45
Vibrio cholerae E7946 ATCC 55056
Xanthomonas campestris pv. campestris strain 8004
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