SEED Subsystem: DNA Repair Base Excision in Pedobacter sp. GW460-11-11-14-LB5

Experiments:

Role Gene Name  
ATP-dependent DNA ligase (EC 6.5.1.1) No genes
ATP-dependent DNA ligase (EC 6.5.1.1) LigC CA265_RS09095
ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD CA265_RS06915
  CA265_RS20470
DNA ligase (EC 6.5.1.2) CA265_RS02055
DNA polymerase I (EC 2.7.7.7) CA265_RS19630
DNA polymerase II (EC 2.7.7.7) No genes
DNA-3-methyladenine glycosylase (EC 3.2.2.20) CA265_RS19650
DNA-3-methyladenine glycosylase II (EC 3.2.2.21) CA265_RS04660
  CA265_RS09285
Endonuclease III (EC 4.2.99.18) CA265_RS00605
Endonuclease VIII No genes
Exodeoxyribonuclease I (EC 3.1.11.1) No genes
Flap structure-specific endonuclease (EC 3.-.-.-) No genes
Formamidopyrimidine-DNA glycosylase (EC 3.2.2.23) No genes
Ku domain protein CA265_RS08735
Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) CA265_RS25225
Single-stranded-DNA-specific exonuclease RecJ, clostridial paralog No genes
Single-stranded-DNA-specific exonuclease RecJ, cyanobacterial paralog No genes
Uracil-DNA glycosylase, family 1 CA265_RS10890

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