SEED Subsystem: D-Galacturonate and D-Glucuronate Utilization in Pedobacter sp. GW460-11-11-14-LB5

Experiments:

Role Gene Name  
2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase (EC 1.1.1.127) No genes
2-dehydro-3-deoxygluconate kinase (EC 2.7.1.45) CA265_RS19865
2-dehydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) No genes
2-deoxy-D-gluconate 3-dehydrogenase (EC 1.1.1.125) CA265_RS00760
2-keto-3-deoxygluconate permease (KDG permease) No genes
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase (EC 5.3.1.17) CA265_RS00755
5-dehydro-4-deoxyglucarate dehydratase (EC 4.2.1.41) No genes
Alcohol dehydrogenase, zinc-containing No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 1 No genes
Alpha-1,4-digalacturonate ABC transporter, permease protein 2 No genes
Alpha-1,4-digalacturonate ABC transporter, substrate-binding protein No genes
Alpha-glucosidase (EC 3.2.1.20) CA265_RS01580
  CA265_RS05300
  CA265_RS13795
Alpha-glucuronidase (EC 3.2.1.139) No genes
Altronate hydrolase (EC 4.2.1.7) No genes
Altronate oxidoreductase (EC 1.1.1.58) CA265_RS19880
Beta-glucuronidase (EC 3.2.1.31) No genes
Carbohydrate-binding, CenC domain protein No genes
D-galactarate dehydratase (EC 4.2.1.42) No genes
D-mannonate oxidoreductase (EC 1.1.1.57) CA265_RS07220
Endo-1,4-beta-xylanase A precursor (EC 3.2.1.8) CA265_RS05810
  CA265_RS07175
Exopolygalacturonate lyase (EC 4.2.2.9) No genes
Fructuronate transporter GntP No genes
Galacturan 1,4-alpha-galacturonidase (EC 3.2.1.67) No genes
Glucuronide permease No genes
Glucuronide transport facilitator UidC No genes
Glucuronide transporter UidB No genes
Hexuronate transporter CA265_RS19855
Hexuronate utilization operon transcriptional repressor ExuR No genes
Intracellular alpha-amylase (EC 3.2.1.1) No genes
Ketoglutarate semialdehyde dehydrogenase (EC 1.2.1.26) CA265_RS05705
Mannonate dehydratase (EC 4.2.1.8) CA265_RS07225
Novel D-mannonate dehydrogenase (EC 1.1.1.57) No genes
Novel D-mannonate-D-gluconate epimerase No genes
Novel D-tagaturonate epimerase No genes
Oligogalacturonate lyase (EC 4.2.2.6) No genes
Oligogalacturonate-specific porin protein KdgM No genes
Pectate lyase precursor (EC 4.2.2.2) CA265_RS07975
  CA265_RS19885
Pectin degradation protein KdgF CA265_RS15865
Pectin lyase (EC 4.2.2.10) No genes
Pectinesterase (EC 3.1.1.11) No genes
Polygalacturonase (EC 3.2.1.15) CA265_RS05770
  CA265_RS08370
  CA265_RS13780
  CA265_RS19895
Predicted 2-keto-3-deoxygluconate-responsive regulator of glucuronate utilization, IclR family No genes
Predicted D-glucuronide-specific TRAP transporter, large transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, small transmembrane component No genes
Predicted D-glucuronide-specific TRAP transporter, substrate-binding component No genes
Putative methyl oligogalcturonate esterase No genes
Regulator of pectin and galacturonate utilization, GntR family No genes
Rhamnogalacturonides degradation protein RhiN CA265_RS03905
  CA265_RS05520
  CA265_RS06065
  CA265_RS13345
  CA265_RS13805
  CA265_RS19890
Transcriptional regulator KdgR, KDG operon repressor No genes
Transcriptional repressor UidR No genes
Uronate dehydrogenase (EC 1.1.1.203) No genes
Uronate isomerase (EC 5.3.1.12) CA265_RS19870
Uronate isomerase, family BH0493 (EC 5.3.1.12) No genes
Uxu operon transcriptional regulator No genes
Xylan oligosaccharide ABC transporter, ATP-binding protein 1 No genes
Xylan oligosaccharide ABC transporter, substrate-binding component No genes
Xylan oligosaccharide ABC transporter, ATP-binding protein 2 No genes
Xylan oligosaccharide ABC transporter, permease component 1 No genes
Xylan oligosaccharide ABC transporter, permease component 2 No genes

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