SEED Subsystem: Serine-glyoxylate cycle in Shewanella loihica PV-4

Experiments:

Role Gene Name  
3-ketoacyl-CoA thiolase (EC 2.3.1.16) No genes
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20) Shew_0522 metF
5-FCL-like protein, but predicted not to be 5-formyltetrahydrofolate cyclo-ligase (5-FCL) No genes
5-formyltetrahydrofolate cyclo-ligase (EC 6.3.3.2) Shew_3069
Acetoacetyl-CoA reductase (EC 1.1.1.36) No genes
Acetyl-CoA acetyltransferase (EC 2.3.1.9) No genes
Aconitate hydratase (EC 4.2.1.3) No genes
Citrate synthase (EC 2.3.3.1) No genes
Citrate synthase (si) (EC 2.3.3.1) Shew_1650 gltA
Enolase (EC 4.2.1.11) Shew_1205
Formate--tetrahydrofolate ligase (EC 6.3.4.3) Shew_0443
Formiminotetrahydrofolate cyclodeaminase (EC 4.3.1.4) No genes
Fumarate hydratase class I, aerobic (EC 4.2.1.2) Shew_1904
Fumarate hydratase class I, anaerobic (EC 4.2.1.2) No genes
GDSL-like lipase/acylhydrolase No genes
Glycerate kinase (EC 2.7.1.31) Shew_2534
Isocitrate lyase (EC 4.1.3.1) Shew_1276
Malate dehydrogenase (EC 1.1.1.37) Shew_0867
Malate synthase-related protein Shew_2559
Malyl-CoA lyase (EC 4.1.3.24) No genes
Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9) Shew_2510
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4) Shew_2573
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4) Shew_2571
Methylene tetrahydromethanopterin dehydrogenase (EC 1.5.99.9) No genes
Methylenetetrahydrofolate dehydrogenase (NADP+) (EC 1.5.1.5) Shew_2510
Methylmalonyl-CoA mutase (EC 5.4.99.2) No genes
N(5),N(10)-methenyltetrahydromethanopterin cyclohydrolase (EC 3.5.4.27) No genes
Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) Shew_3623
Phosphoglyceromutase No genes
Propionyl-CoA carboxylase beta chain (EC 6.4.1.3) No genes
Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3) No genes
Putative malate dehydrogenase (EC 1.1.1.37), similar to archaeal MJ1425 No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) Shew_1185 glyA
Serine--glyoxylate aminotransferase (EC 2.6.1.45) No genes
Serine--pyruvate aminotransferase (EC 2.6.1.51) Shew_0294
Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase No genes
Succinate dehydrogenase flavoprotein subunit (EC 1.3.99.1) Shew_0334
  Shew_1653 sdhA
Succinate dehydrogenase iron-sulfur protein (EC 1.3.99.1) Shew_0335 sdhB
  Shew_1654 sdhB
Succinyl-CoA ligase [ADP-forming] alpha chain (EC 6.2.1.5) Shew_1658
Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5) Shew_1657 sucC
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit A (EC 2.8.3.5) Shew_2575
Succinyl-CoA:3-ketoacid-coenzyme A transferase subunit B (EC 2.8.3.5) Shew_2576
crotonyl-CoA reductase No genes
cytosolic long-chain acyl-CoA thioester hydrolase family protein Shew_1159
  Shew_1546
  Shew_1607
decarboxylase No genes
isobutyryl-CoA dehydrogenase No genes
low-specificity D-threonine aldolase No genes
polyhydroxyalkanoate synthesis repressor PhaR No genes
putative glycerate kinase No genes
putative isobutyryl-CoA mutase, chain B No genes

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Or view this subsystem at the SEED (slow)