SEED Subsystem: Queuosine-Archaeosine Biosynthesis in Shewanella loihica PV-4

Role	Gene	Name
COG2047: Uncharacterized protein (ATP-grasp superfamily)	No genes
Dihydroneopterin triphosphate pyrophosphohydolase	No genes
Dihydroneopterin triphosphate pyrophosphohydolase type 2	No genes
GTP cyclohydrolase I (EC 3.5.4.16) type 1	Shew_3486	folE
GTP cyclohydrolase I (EC 3.5.4.16) type 2	No genes
Glutamine amidotransferases class-II (GATase)	No genes
Hydrolase (HAD superfamily) in cluster with DUF1447	No genes
Inosine-uridine preferring nucleoside hydrolase (EC 3.2.2.1)	Shew_0697	rihA
	Shew_3859
NADPH dependent preQ0 reductase	No genes
NADPH dependent preQ0 reductase-like	No genes
Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8)	No genes
Peptidyl-prolyl cis-trans isomerase ppiB (EC 5.2.1.8)	No genes
Permease of the drug/metabolite transporter (DMT) superfamily	Shew_0223
	Shew_0252
	Shew_0556
	Shew_0682
	Shew_0694
	Shew_1696
	Shew_2845
	Shew_3109
	Shew_3337
Putative preQ0 transporter	Shew_3679
Queuosine Biosynthesis QueC ATPase	Shew_2062
Queuosine Biosynthesis QueE Radical SAM	Shew_2061
Queuosine biosynthesis QueD, PTPS-I	No genes
Radical SAM family enzyme, similar to coproporphyrinogen III oxidase, oxygen-independent, clustered with nucleoside-triphosphatase RdgB	Shew_1131
S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC 5.-.-.-)	Shew_2338
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter	No genes
Substrate-specific component STY3230 of queuosine-regulated ECF transporter	No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1	No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 1 like	No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 2	No genes
archaeosine tRNA-ribosyltransferase (EC 2.4.2.-) type 5	No genes
glutamyl-Q-tRNA synthetase	Shew_3130
preQ1-regulated inosine-uridine nucleoside hydrolase (EC 3.2.2.1)	No genes
tRNA-guanine transglycosylase (EC 2.4.2.29)	Shew_2337	tgt