SEED Subsystem: Photorespiration (oxidative C2 cycle) in Shewanella loihica PV-4

Experiments:

Role Gene Name  
2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60) Shew_1609
2-oxoglutarate/malate translocator No genes
Aminomethyltransferase (glycine cleavage system T protein) (EC 2.1.2.10) Shew_3064 gcvT
Catalase (EC 1.11.1.6) Shew_0709
  Shew_3190
D-Lactate dehydrogenase, cytochrome c-dependent (EC 1.1.2.4) No genes
D-glycerate 3-kinase (EC 2.7.1.31), plant type No genes
Dihydrolipoamide dehydrogenase (EC 1.8.1.4) Shew_3429
Expressed protein possibly involved in photorespiration No genes
Glycerate kinase (EC 2.7.1.31) Shew_2534
Glycine cleavage system H protein Shew_3063
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) Shew_3062
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P1 protein) (EC 1.4.4.2) No genes
Glycine dehydrogenase [decarboxylating] (glycine cleavage system P2 protein) (EC 1.4.4.2) No genes
Glycolate dehydrogenase (EC 1.1.99.14), FAD-binding subunit GlcE No genes
Glycolate dehydrogenase (EC 1.1.99.14), iron-sulfur subunit GlcF No genes
Glycolate dehydrogenase (EC 1.1.99.14), subunit GlcD Shew_1550
Glycolate oxidase (EC 1.1.3.15) No genes
Glycolate permease No genes
Glyoxylate carboligase (EC 4.1.1.47) No genes
Hydroxypyruvate reductase (EC 1.1.1.81) No genes
L-alanine:glyoxylate aminotransferase (EC 2.6.1.44) Shew_0294
Malate synthase (EC 2.3.3.9) Shew_1275
Malate synthase G (EC 2.3.3.9) No genes
Malyl-CoA lyase (EC 4.1.3.24) No genes
Phosphoglycolate phosphatase (EC 3.1.3.18) Shew_0220
Ribulose bisphosphate carboxylase (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase large chain (EC 4.1.1.39) No genes
Ribulose bisphosphate carboxylase small chain (EC 4.1.1.39) No genes
Ribulose-1,5-bisphosphate carboxylase, Type III (EC 4.1.1.39) No genes
Serine hydroxymethyltransferase (EC 2.1.2.1) Shew_1185 glyA
Serine--glyoxylate aminotransferase (EC 2.6.1.45) No genes

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