SEED Subsystem: Nitrate and nitrite ammonification in Shewanella loihica PV-4

Experiments:

Role Gene Name  
Assimilatory nitrate reductase large subunit (EC:1.7.99.4) No genes
Cytochrome c nitrite reductase, small subunit NrfH No genes
Cytochrome c-type heme lyase subunit nrfE, nitrite reductase complex assembly Shew_0347
Cytochrome c-type heme lyase subunit nrfF, nitrite reductase complex assembly Shew_0346
Cytochrome c-type heme lyase subunit nrfG, nitrite reductase complex assembly Shew_0351
Cytochrome c-type protein NapC Shew_1772
  Shew_2797
Cytochrome c-type protein NrfB precursor Shew_3156
Cytochrome c552 precursor (EC 1.7.2.2) Shew_0505
  Shew_0844 nrfA
Ferredoxin--nitrite reductase (EC 1.7.7.1) No genes
Ferredoxin-type protein NapF (periplasmic nitrate reductase) Shew_1432
Ferredoxin-type protein NapG (periplasmic nitrate reductase) Shew_3207 napG
Nitrate ABC transporter, ATP-binding protein No genes
Nitrate ABC transporter, nitrate-binding protein No genes
Nitrate ABC transporter, permease protein No genes
Nitrate reductase cytochrome c550-type subunit Shew_1771
  Shew_3209
Nitrate/nitrite response regulator protein Shew_0842
Nitrate/nitrite sensor protein (EC 2.7.3.-) Shew_0843
Nitrate/nitrite transporter No genes
Nitrite reductase [NAD(P)H] large subunit (EC 1.7.1.4) No genes
Nitrite reductase [NAD(P)H] small subunit (EC 1.7.1.4) No genes
Nitrite reductase probable [NAD(P)H] subunit (EC 1.7.1.4) No genes
Nitrite reductase probable electron transfer 4Fe-S subunit (EC 1.7.1.4) No genes
Nitrite transporter NirC No genes
Nitrite transporter from formate/nitrite family No genes
NrfC protein Shew_0352
  Shew_3157
NrfD protein Shew_0353
  Shew_3158
  Shew_3245
Periplasmic nitrate reductase component NapD No genes
Periplasmic nitrate reductase component NapE Shew_1768
Periplasmic nitrate reductase component NapL No genes
Periplasmic nitrate reductase precursor (EC 1.7.99.4) Shew_1770
  Shew_3206
Polyferredoxin NapH (periplasmic nitrate reductase) Shew_3208 napH
Putative thiol:disulfide oxidoreductase, nitrite reductase complex assembly No genes
Respiratory nitrate reductase alpha chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase beta chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase delta chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase gamma chain (EC 1.7.99.4) No genes
Respiratory nitrate reductase subunit, conjectural (EC 1.7.99.4) No genes
Response regulator NasT No genes

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